Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00494 ATGATGATTTCGAGAGGTTTGTTCGGGTGGTCCCCACCGCACGTACAACCGCTCACACCGGTTTCGGAGGTATCGGAGCCACCGGAATCTCCTTCACCGTATTTAGACCCCGGAGCTGATCCCTCCGCGTCGCAACAGGCGGAAGTTGAAGAGGAAATGGAGCAGGAAGAGGATATGGAACCGGCGCCAGCTGCGGTTCCTTTCTCGAAGCTTTTCGCGTGTGCTGATCGGTTTGATTGGTTTCTCATGGCGGTTGGTTCTGTTGCTGCTGCAGCTCATGGAACCGCTCTTGTAGTTTACTTGCATTACTTTGCTAAGATTATTCATGTTATGCGGATGGATGATCAGCCAATGACGTCGCAGGAGCGGTTTGATAAGTTCACTGAGCTTGCTTTAACCATTGTTTACATTGCTGCAGGAGTTTTTGCTGCTGGTTGGATTGAGGTTTCATGTTGGATTTTGACTGGAGAACGACAAACTGCTGTCATCAGGTCCAAATATGTCCAAGTATTGCTAAATCAGGATATGAGTTTTTTTGATACTTATGGGAATAATGGAGACATTGTGAGTCAAGTATTGAGTGATGTGCTGCTTATCCAGTCTGCTCTTAGTGAAAAAGTTGGAAATTACATTCATAATATGGCTACATTCTTCAGTGGTCTTGTCATTGGCCTTATCAATTGTTGGCAGATTGCTTTGTTAACATTAGCAACAGGTCCTTTCATTGTTGCCGCAGGAGGAATATCAAATATATTCCTCCATAGACTTGCAGAGAATATCCAAGATGCATATGCTGAAGCAGCTAGCATTGCTGAACAGGCAGTTTCCTATGTAAGGACATTGTATGCATTTACAAATGAAACGTTGGCCAAGTACTCATATGCAACATCACTGCAAGCTACTCTTAGATATGGCATATTAATAAGTCTTGTTCAAGGGCTAGGTCTTGGATTCACGTATGGACTTGCAATATGTTCTTGTGCATTACAACTTTGGATTGGAAGATTCTTGGTTATTCACGGAAAAGCGCATGGTGGTGAAATAGTAACTGCTCTTTTTGCTGTAATTCTAAGTGGCCTGGGATTGAATCAAGCAGCAACAAATTTCTACTCCTTTGAACAAGGGCGGATAGCTGCTTATAGATTATATGAGATGATAAGCCGGTCATCCTCATCTGTTAATGATGATGGCACCTCCCTTGACTCTGTGCAAGGAAATATAGTGTTTCGGAATGTTTATTTCAGCTATCTGTCTCGTCCCGAAATACCTATCTTGAGTGGATTTTATCTCACTGTACCTTCTAAGAAAGCTGTAGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGCAGCATTATTCCACTCATGGAGCGTTTTTATGATCCTACATTAGGAGAAGTTCTTTTAGATGGTGAAAACATCAAGAATTTGAATTTGGAATGGCTGAGGAGCCAGATAGGACTAGTTACCCAGGAGCCTGCTTTGCTCAGTTTGAGTATAAGAGATAACATTGCTTATGGGAGGGATGTCACCATGGATCAAATTGAAGAGGCTGCTAAAATAGCTCATGCACATACATTTATCAGCTCATTGAAGAAAGGCTATGACACACAGGTTGGCAGGGCAGGTTTAGCTTTGACAGAAGAGCAGAAAATAAAACTTTCTATTGCAAGAGCTGTGCTTCTAAATCCATCAATTCTTCTGCTTGATGAAGTAACTGGTGGACTTGATTTTGAGGCTGAGAGGGCTGTTCATGAGGCTCTGGACATGATTATGTTGGGACGCTCAACAATAATAATTGCTCGAAGGCTTAGTCTCATAAGAAATGCTGATTATATAGCTGTTATGGAGGAGGGTCAACTCGTTGAAATGGGTACTCATGATGAATTGTTGAACCTAAATGGCTTATATGCAGAGCTTCTACGTGGCGAAGAGGCAGCAAAACTTCCCAAGCGGATGCCTACTCGAAACTACAAGGAGACTGCAGCATTTCAAATTGAGAATGATTCTTCAGCGAGCCATAGCTTGAATGAACCATCATCCCCCAAAATGAAGAAGTCACCCTCTCTTCAAAGAATTTCTAATGTATCACATTCACGACCTTCAGATGTCATCTATAAATTTCAAGATTCGCCTGAAGTCCCGAGTCCATCATCCGAGAAGGTGCTGGAAAATGGTCAAGCTCCGGGTGCAGATGATAAGGAGCCATCCATAAGAAGGCAGGATAGTTTTGAAATGAGACTGCCAGAGTTACCCAAGATTGATATACAGTCTGTGCCTCGGCAAAAATCAAATGGTTCTGACCCAGAATCCCCCATTTCACCATTTTTAACATCTGATCCTAAGAAAGAACGTTCCCATTCACAATCTTTTAGTAGACCACATAGTCATTCTGATGATGCTTCAGTTACAATGAGAGAAGAAAGGGGAGCACGGAAGCGGAAACCACCATCACTTCAGAAGTTGATCGAGCTTAGTTTTGCCGAGTGGCTTTATGCTCTGTTAGGAAGCATTGGCGCTGCTGCCTTTGGTTCATTCAATCCCCTTCTAGCTTATGTTGTTGGCCTTGTGGTGGCAGCTTACTATAGAATTGATGATCAACATCACTTAGCACAGGAGGTAGACAAGTGGTGCTTGATCATTGGCTGTATGGGTATTGTAACAGTTATTGCCAACTTTTTGCAGCATTTCTATTTTGGTATTATGGGAGAGAAAATGACAGAAAGAATTAGGAGAATGATGTTCTCAGCCATGCTAAGGAATGAAGTAGGATGGTTTGATGATGAGGAAAACAGTGCTGACAATTTATCCATGAGATTGGCCAATGATGCTACTTTTGTAAGAGCTGCTTTTAGCAATCGACTTTCCATATTTATACAGGACAGTGCTGCGGTTATTGTTGGCCTTCTCATTGGTGCTGTGCTGCACTGGCGGTTAGCACTGTTGGCTTTTGCAACCCTTCCAATTCTCTGTATTTCGGCAGTTGCCCAGAAATTGTGGCTAGCTGGATTTTCAAGGGGCATACAGGAAATGCACAGAAAAGCATCTTTGGTTCTTGAAGACGCAGTTAGAAATATATACACTGTTGTTGCATTTTGTGCTGGCAATAAGGTAATGGAGCTCTATAGGATGCAATTAAAAAAAATATTTACGAAGAGCTTTCTTCATGGGATGGCGATTGGTTTTGCATTCGGCTTTTCACAGTTTCTACTTTTTGCCTGTAATGCCCTTCTACTTTGGTACACCGCAGTATGTATTAAAAATGGTTACATAAATCCATCCACTGCACTGAGGGAGTACATGGTTTTCTCATTTGCTACATTTGCCTTAGTGGAGCCTTTTGGATTGGCTCCTTACATACTTAAACGGCGAAAATCCCTTATATCAGTGTTTGGCATTATAGACCGTGAGCCTAAAATTGATCCTGATGACAACACGGCATTGAAGCCACCCAATGTATATGGAAGCATCGAGTTAAAACATGTTGATTTTTGTTACCCTTCTCGTCCTGAAGTGTTGGTATTGAGCAATTTTAGTCTCAAAGTGAATGGGGGCCAAACAATTGCTGTTGTTGGAGTTTCGGGGTCAGGAAAGAGCACTATAATATCTTTGATTGAGAGGTTTTATGATCCAGTTGCGGGGCAAATTTTACTCGATGGGAAGGATTTAAAGCTCTATAACTTGAGATGGTTAAGGAGCCACCTCGGTTTGATTCAACAGGAACCTATTATCTTCTCATCAACCATAAGGGAAAACATTATATATGCAAGGCATAATGCTAGTGAAGCTGAGATGAAAGAGGCAGCGAGAATAGCAAATGCTCATCATTTTATTAGCAGCTTGCCTCATGGTTATGACACTCATATTGGGATGAGAGGTGTTGACTTAACCCCAGGACAGAAACAGAGAATTGCAATTGCAAGGGTAGTACTGAAAAATGCACCTATCTTGTTGTTGGATGAAGCAAGTTCGTCAGTTGAATCCGAGTCAAGCCGAGTGATACAAGAAGCTCTAGACACACTAATAATGGGAAACAAGACCACTGTTTTAATAGCGCATAGAGCTGCAATGATGAGACACGTGGACAATATTGTAGTGCTTAATGGAGGACGAATAGTGGAAGAGGGAAGTCATGATTCGTTGGTGGCAAAGAATGGTCTGTATGTCAGATTGATGCAACCTCATTTTGGTAAGGCTATACGTCAGCATCGGCTTGTTTAG 4218 0.4215 MMISRGLFGWSPPHVQPLTPVSEVSEPPESPSPYLDPGADPSASQQAEVEEEMEQEEDMEPAPAAVPFSKLFACADRFDWFLMAVGSVAAAAHGTALVVYLHYFAKIIHVMRMDDQPMTSQERFDKFTELALTIVYIAAGVFAAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGLINCWQIALLTLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYVRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWIGRFLVIHGKAHGGEIVTALFAVILSGLGLNQAATNFYSFEQGRIAAYRLYEMISRSSSSVNDDGTSLDSVQGNIVFRNVYFSYLSRPEIPILSGFYLTVPSKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLNLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDVTMDQIEEAAKIAHAHTFISSLKKGYDTQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVHEALDMIMLGRSTIIIARRLSLIRNADYIAVMEEGQLVEMGTHDELLNLNGLYAELLRGEEAAKLPKRMPTRNYKETAAFQIENDSSASHSLNEPSSPKMKKSPSLQRISNVSHSRPSDVIYKFQDSPEVPSPSSEKVLENGQAPGADDKEPSIRRQDSFEMRLPELPKIDIQSVPRQKSNGSDPESPISPFLTSDPKKERSHSQSFSRPHSHSDDASVTMREERGARKRKPPSLQKLIELSFAEWLYALLGSIGAAAFGSFNPLLAYVVGLVVAAYYRIDDQHHLAQEVDKWCLIIGCMGIVTVIANFLQHFYFGIMGEKMTERIRRMMFSAMLRNEVGWFDDEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVGLLIGAVLHWRLALLAFATLPILCISAVAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRMQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTAVCIKNGYINPSTALREYMVFSFATFALVEPFGLAPYILKRRKSLISVFGIIDREPKIDPDDNTALKPPNVYGSIELKHVDFCYPSRPEVLVLSNFSLKVNGGQTIAVVGVSGSGKSTIISLIERFYDPVAGQILLDGKDLKLYNLRWLRSHLGLIQQEPIIFSSTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHIGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSVESESSRVIQEALDTLIMGNKTTVLIAHRAAMMRHVDNIVVLNGGRIVEEGSHDSLVAKNGLYVRLMQPHFGKAIRQHRLV 1405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00494 1405 Pfam ABC transporter transmembrane region 86 357 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g00494 1405 Pfam ABC transporter transmembrane region 839 1101 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g00494 1405 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1156 1393 IPR003439 GO:0005524
Trre13g00494 1405 FunFam ABC transporter B family member 20 70 408 - -
Trre13g00494 1405 MobiDBLite consensus disorder prediction 11 60 - -
Trre13g00494 1405 Pfam ABC transporter 428 572 IPR003439 GO:0005524
Trre13g00494 1405 Gene3D ABC transporter type 1, transmembrane domain 770 1001 IPR036640 GO:0005524|GO:0016020
Trre13g00494 1405 Gene3D ABC transporter type 1, transmembrane domain 1003 1153 IPR036640 GO:0005524|GO:0016020
Trre13g00494 1405 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1145 1392 IPR027417 -
Trre13g00494 1405 MobiDBLite consensus disorder prediction 664 814 - -
Trre13g00494 1405 Gene3D ABC transporter type 1, transmembrane domain 70 657 IPR036640 GO:0005524|GO:0016020
Trre13g00494 1405 FunFam ABC transporter B family member 20 1146 1395 - -
Trre13g00494 1405 Gene3D - 397 644 IPR027417 -
Trre13g00494 1405 Coils Coil 253 273 - -
Trre13g00494 1405 SUPERFAMILY ABC transporter transmembrane region 70 382 IPR036640 GO:0005524|GO:0016020
Trre13g00494 1405 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 84 374 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g00494 1405 FunFam ABC transporter B family member 6 773 1001 - -
Trre13g00494 1405 Pfam ABC transporter 1174 1322 IPR003439 GO:0005524
Trre13g00494 1405 MobiDBLite consensus disorder prediction 757 773 - -
Trre13g00494 1405 MobiDBLite consensus disorder prediction 779 814 - -
Trre13g00494 1405 FunFam ABC transporter B family member 20 397 644 - -
Trre13g00494 1405 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 396 641 IPR027417 -
Trre13g00494 1405 FunFam ABC transporter B family member 6 1003 1153 - -
Trre13g00494 1405 PANTHER ABC TRANSPORTER B FAMILY 46 642 IPR039421 -
Trre13g00494 1405 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 382 - -
Trre13g00494 1405 SUPERFAMILY ABC transporter transmembrane region 819 1141 IPR036640 GO:0005524|GO:0016020
Trre13g00494 1405 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 407 642 IPR003439 GO:0005524
Trre13g00494 1405 Gene3D - 1154 1393 IPR027417 -
Trre13g00494 1405 MobiDBLite consensus disorder prediction 664 703 - -
Trre13g00494 1405 SMART AAA_5 434 613 IPR003593 GO:0016887
Trre13g00494 1405 SMART AAA_5 1183 1370 IPR003593 GO:0016887
Trre13g00494 1405 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 833 1125 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g00494 1405 CDD ABC_6TM_Pgp_ABCB1_D2_like 828 1139 - -
Trre13g00494 1405 MobiDBLite consensus disorder prediction 732 748 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00494 Trre-Chr13 3890527 3899333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00494 56 727 Calmodulin-binding Proteins AT2G36910 42.206 2.48e-166 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00494 K05658 - gmx:100789116 2431.37