Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00491 ATGCCTGCAGCTAAGGCCTTGAAGACGGCCAAGGCTGTGAAATCAGGTGGGGCAGTGATTAAGAAGAAAGCAAAGAAGATCAGAACAGCAATCACATTTCACCGGCCAAAGACTTTGTCAAAGGAAAGGAACCCAAAGTATCCCCGCATTAGTGCAACACCAAGAAACAAGTTGGACCATTATCAAATTCTTAAATTTCCTTTGACTACAGAGTCTGCAATGAAGAAAATCGAAGATAACAATACACCAGTCTTTATTGTCGATCTCTGCTGA 273 0.4212 MPAAKALKTAKAVKSGGAVIKKKAKKIRTAITFHRPKTLSKERNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTPVFIVDLC 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00491 90 Gene3D - 24 90 IPR012677 -
Trre13g00491 90 Pfam Ribosomal protein L23, N-terminal domain 3 52 IPR005633 -
Trre13g00491 90 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 60 89 IPR012678 GO:0003735|GO:0005840|GO:0006412
Trre13g00491 90 PANTHER 60S RIBOSOMAL PROTEIN L23A 3 89 IPR013025 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00491 Trre-Chr13 3881392 3881664 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00491 26 89 Cytoplasmic Ribosomal Protein Gene Family AT3G55280 84.375 3.62e-35 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00491 K02893 - gmx:100527754 134.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00491 13 3881392 3881664 Trre13g00491 13 3881392 3881664 ECH