Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00489 ATGGTGGGTAACGACGATGCTCGAGCTCCATGCCACCTTTCAAATTCCCGGAAAATGTTTTGGCGCTCTGCTTCGTGGTCTTCCGCTCGTTCCTCCGCCGCAACCCCTTCCGGAGAATCGGAATCGAATTTCTCAGATCCCAATTCTGGTGTTGAGAATACCAACCGGAGATTCCCTCCGCCGCCGTTGACGCCTAGGTCGCAGCAAAATTGTAAAGCACGGTCGTCGTGTTTGCCGCCTCTTCAGCCGCTTTCGATTGCTCGCCGGAGTTTGGATGAGTGGCCGAAAGCGAGTTCCGACGATATCGGGGAGTGGCCACAACCACCTATTACTCCTGGTGGGAGAGGTAATGGTAGTAGCAATAGTATTAGTAATAACAATGGTGAAAGGTTGAAACTTGATTTGTCTACAATTCAGCAGAATAATAATCCTGATAGTAGGAATAATGGTGGACTTGTGAAGAGAGATAAGATTGCTTTTTTTGATAAGGAATGTTCTAAAGTTGCTGAACATGTTTATCTTGGTGGTGATGCTGTTGCTAAAGATAGGGAAATTTTGAAAAGAAATGGGATTACTCATGTTTTGAATTGTGTAGGTTTTGTTTGTCCTGAGTATTTCAAAGCTGATTTTGTGTATAGGACTTTGTGGCTACAAGATAGTCCTAGTGAGGATATTACTAGTATTTTGTATGATGTGTTTGATTATTTTGAGGATGTTAGGGAAAAGAATGGGAGGGTGTTTGTTCATTGTTGTCAAGGGGTGTCTAGGTCGACGTCTCTTGTTATTGCTTACCTTATGTGGAGGGAAGGGCAGAGTTTTGATGATGCTTTTCAGTTTGTGAAGGCGGCGAGAGGTATTGCTGATCCGAATATGGGTTTTGCTTGTCAGTTGTTGCAGTGTCAGAAAAGGGTTCATGCATTCCCTCTTAGTCCTAGCTCTTTGTTGAGAATGTATAGGATTGCTCCTCACTCGCCGTATGATCCCTTGCATCTTGTTCCGAAGATGTTGACGGATCCGTCTTCGTCTGCTTTGGATTCCAGGGGTGCGTTTATTGTGCATATTCCTTCGGCGATATATGTTTGGATTGGTAAGAATTGTGAAGCTATCATGGAAAGGGATGCTAGAGGGGCTGCGGGTCAGATTGTCCGGTATGAGAGAGTGCAAGGATCGGTTATCATGATTAAGGAAGGTGAGGAACCACCTTCTTTTTGGGATTGTTTTTCGAAGTTTTTGCCTTTGATGGACATGAGTGGTGGCAGTAAAGTAGAAAGTAGCAAATCGAGTGTTAAATATTTTCCTGGTCAGAGGAAAGTTGATGCATATGATGTGGATTTTGAAGTTTTCGGAAAAGCTATTGTGGGAGGTTTTGTGCCTCCATTTGCATCATCGGAGAATGAACATGAAACCCATCTTCCTGCAAGAGAGAGTAGTTGGAGTGTTTTAAGGCGGAAAGGTTCCTCTCCTAATGTGAAGGAATTTGTCTCAGCTCCTAAGTTATCCCTCCCACGGGTTTATTCAGATTCCATGTTGTGTATTCATACATCACAAATTCAACAATTTCCATCACCCTCTATGTCGTCAACATCCTCAACTTTATCATCATCCTCTTCACCCCCCTTTGTCTCTCCAGATTCCGTTTCTTCTGATTCTAGCACTCACTCAAAGTTTTTGTTAGATTTGTCCCCAGATTCCTCCTCTCTAGTTTTTGCTCCTATTCCAGTATCTTCATCGTTGTCTAGCTTCTCTAATTTGTCCCTCTCGTCAAATTCTACTTCTCAACCAGCATCTACATGTACAGATATTGATGGCGTCAAGTTATCACATCCATGTTCTCAGTCTGCCTCCTTACCATTGAAAAAACCATCAACTTCCATTGCTGAACGCAGAGGTAGTCTATCCAAGTCTTTGAAGTTGCCACCTCTAACGAATAATAACTCAAAAATAACAGATAAACCATCAACTATTCGTTCCAGTCGAGAACACGGTGTTCTTGATAACAACTTTAGCTGCGTGCAAGATTCAGACAGTATAGATTATTTGTTTGATTCTACTAACCATGTCAAAGGTGGAGATACAAACTCAGTTCAACAGTGTGAGGTGGCATCACGCCCAGTCATTGTTGATAGTGCAGGCTGCGAGGAATCATCACTTCTCAGGAACTGTGTTGAGCTTTCGGGAGATAGTTTGTCAAGGGAAGATTTGAACTCTACCTCATCAAAGGGAGCTGATGAGAGTGACTCCTTGCAATGTAGTAAGACCCAAACTTTAGTATATCGCTGGCCCAGTTTAGAAAAGATTGAGACTTTCGGTGCAAATCATTTGGGCTCTGAGGCTGCTTTTGTCATATTCTCTCCAAGCACACATATGCATACAGGAAACATTTTTTATATTTGGGTAGGGAGTTCTTTCAAACTGGATGCTTCACAGACTCAGTTAGATAGTGATAGACAGTCTGATTTTCTTGGAGCAGTTGACTGGAACCGAATTGGTTATGATCTCCTTGCTCAGTTTGATTTGCCGAAGGATACAGTCACTAAGATTGTTAAAGAGAATGAAGAACCGCAAGAGTTCCTTGCTTTGCTGAGTTCATTGTAG 2595 0.4274 MVGNDDARAPCHLSNSRKMFWRSASWSSARSSAATPSGESESNFSDPNSGVENTNRRFPPPPLTPRSQQNCKARSSCLPPLQPLSIARRSLDEWPKASSDDIGEWPQPPITPGGRGNGSSNSISNNNGERLKLDLSTIQQNNNPDSRNNGGLVKRDKIAFFDKECSKVAEHVYLGGDAVAKDREILKRNGITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREKNGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQFVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLTDPSSSALDSRGAFIVHIPSAIYVWIGKNCEAIMERDARGAAGQIVRYERVQGSVIMIKEGEEPPSFWDCFSKFLPLMDMSGGSKVESSKSSVKYFPGQRKVDAYDVDFEVFGKAIVGGFVPPFASSENEHETHLPARESSWSVLRRKGSSPNVKEFVSAPKLSLPRVYSDSMLCIHTSQIQQFPSPSMSSTSSTLSSSSSPPFVSPDSVSSDSSTHSKFLLDLSPDSSSLVFAPIPVSSSLSSFSNLSLSSNSTSQPASTCTDIDGVKLSHPCSQSASLPLKKPSTSIAERRGSLSKSLKLPPLTNNNSKITDKPSTIRSSREHGVLDNNFSCVQDSDSIDYLFDSTNHVKGGDTNSVQQCEVASRPVIVDSAGCEESSLLRNCVELSGDSLSREDLNSTSSKGADESDSLQCSKTQTLVYRWPSLEKIETFGANHLGSEAAFVIFSPSTHMHTGNIFYIWVGSSFKLDASQTQLDSDRQSDFLGAVDWNRIGYDLLAQFDLPKDTVTKIVKENEEPQEFLALLSSL 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00489 864 MobiDBLite consensus disorder prediction 610 652 - -
Trre13g00489 864 MobiDBLite consensus disorder prediction 21 79 - -
Trre13g00489 864 Pfam Dual specificity phosphatase, catalytic domain 172 302 IPR000340 GO:0008138|GO:0016311
Trre13g00489 864 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 159 305 IPR029021 -
Trre13g00489 864 Gene3D Protein tyrosine phosphatase superfamily 138 306 IPR029021 -
Trre13g00489 864 SUPERFAMILY Actin depolymerizing proteins 311 413 - -
Trre13g00489 864 MobiDBLite consensus disorder prediction 520 546 - -
Trre13g00489 864 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 223 284 IPR000387 GO:0016311|GO:0016791
Trre13g00489 864 ProSiteProfiles Dual specificity protein phosphatase domain profile. 164 306 IPR020422 GO:0006470|GO:0008138
Trre13g00489 864 Gene3D Severin 315 411 IPR029006 -
Trre13g00489 864 MobiDBLite consensus disorder prediction 610 656 - -
Trre13g00489 864 ProSitePatterns Tyrosine specific protein phosphatases active site. 248 258 IPR016130 GO:0016311|GO:0016791
Trre13g00489 864 PANTHER MKPA PROTEIN 11 861 - -
Trre13g00489 864 CDD DSP 165 299 - -
Trre13g00489 864 MobiDBLite consensus disorder prediction 21 55 - -
Trre13g00489 864 SMART dsp_5 164 303 IPR020422 GO:0006470|GO:0008138
Trre13g00489 864 SMART VILL_6 313 410 IPR007122 GO:0051015
Trre13g00489 864 MobiDBLite consensus disorder prediction 92 128 - -
Trre13g00489 864 MobiDBLite consensus disorder prediction 113 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00489 Trre-Chr13 3871609 3874961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00489 1 200 Protein tyrosine phosphatase (PTP) family AT3G55270 58.824 2.02e-64 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00489 - - vum:124838930 1159.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00489 13 3871609 3874961 Trre13g00489 13 3871609 3874961 ECH