Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00483 ATGCGCATGGAGATAACCTTCGCATCGCACAGTTTCTCCGATCTTCCCTCCGCCGCATCCATGCCGACGACTTCTTCTTCCACTCGTCCTATCAGAGTTATTCCTATGCAACACCCGAACACCAATCCTACTCCTTCTTCGTTGCCGCCGAATATCGCGATTTCTCAATGGGCTTCAAAACTCCGAGGAATGACTTGGCTTCAATGGCTCGAGTTTTTTCTCCCTTGTTTACGTTGGATTCGCATCTATAAATGGCGCGAGTATTTTCAGGTCGATCTAATGGCCGGAATTACCGTCGGTGTTATGCTTGTTCCTCAGTCGATGTCATATGCAAAATTAGCTGGACTTCAACCAATATATGGACTCTACTCTGGTTTTGTGCCCATATTTGTGTATGCCATATTTGGGTCTTCTCGACAGCTTGCAGTTGGCCCGGTAGCATTGGTTTCTCTATTGGTCTCTAATGTTCTAGGCAGTGTAGCTGATTCATCCAGTGAAGTATACACAGAGTTGGCAATTTTACTGGCCCTTATGGTTGGGATACTGGAGTGCATAATGGGACTATTGAGGCTTGGGTGGCTGATCCGTTTCATTAGCCATTCTGTAATCTCTGGCTTTACATCTGCTTCAGCTATTGTGATTGGTTTATCTCAAGCAAAGTACTTTTTGGGGTACGATATAGACAGAAGTAGCAAGATTATACCGTTAGTTAAAAGTATAATAGCAGGAGCTGATAAGTTTTCATGGCCCCCTTTTGTATTGGGATCAGTCATGCTTGCAATACTTCTTGTCATGAAACACCTGGGAAAATCAAGGAAATACTTGCGATTCTTGAGAGCTGCAGGTCCTCTTACAGCAGTTGTCCTGGGAACACTCTTTGTAAAAATATTTCACCCACCATCAATTTCTTTGGTGGGAGAAATACCTCAGGGTCTCCCCAAATTTTCTGTTCCGAGAGCATTTGAGTACGCAGAGTCCTTAATTCCAACTGCTTTTCTTATAACAGGTGTGGCTATACTGGAATCAGTAGGAATCGCAAAGGCGTTAGCAGCAAAGAATGGGTATGAGTTGGATTCAAATCAAGAGTTGTTCGGCCTTGGTGTTTCCAATGTTCTTGGTTCATTCTTTTCAGCATACCCTACTACAGGTTCCTTTTCAAGATCAGCTGTTAATCATGAAAGTGGTGCGAAATCTGGAGTATCAGCGATAGTTTCAGGGATCATAATAACTTGTGCACTTTTGTTTCTGACGCCATTGTTTGAGAGCATACCTCAGTCTGCGCTTGCTGCCATCGTGATCTCTGCTGTGATGGGTCTGGTAGATTATCAGGAGGCCATTTTTTTGTGGCGTGTAGATAAAAAAGATTTTCTTCTTTGGACCATTACTAGCAGTATGACATTGTTCCTTGGTATTGAGATTGGTGTACTTGTTGGGGTTGGAGCTTCACTTGCTTTTGTAATTCATGAGTCAGCAAATCCTCACATTGCTGTTTTGGGCCGTTTGCCAGGGACAACTGTGTATAGAAATGTTAAACAGTATCCCGAAGCATATACATACAATGGAATTGTAATTGTTCGTATTGATGCTCCTATTTATTTTGCAAATATCAGTTACATAAAGGACAGGTTGCGAGAATATGAAGTTGTTGTTGATAGTTATACAAGACGTGGTCCTGAGGTTGAAAGAATCAATTTTGTGATTATAGAGATGGCGCCTGTGACCTACATAGACTCTAGTGCTGTTCAGGCTTTGAAAGACTTGTATCAGGAGTACAAGTTACGAGACATTCAGATTGCCATATCCAATCCAAACCCAGATATTCTGCTTACTTTGTCTAAAGCCGGTCTGGTGGAGTTGATAGGGAAAGAATGGTACTTTGTGAGAGTACACGATGCTGTTCAAGTTTGCTTGCAGCATGTTCAAAGCTTGAAACCAGGATATGAAAGTTCACAATCATCACGCTCTTCTACATCAGACGACAAACCAAGCTTCTTTTCACAATTATTTAAACACAGAGAAGAGAGTCGTACGCCTACTGACTTAGAGTCTGGTAATGGAAGGCCTCCACTCGCCCCAATCAGAGATTCCCAGTCGGAGCCATTGTTGTCAAAAGAACATTGA 2121 0.4257 MRMEITFASHSFSDLPSAASMPTTSSSTRPIRVIPMQHPNTNPTPSSLPPNIAISQWASKLRGMTWLQWLEFFLPCLRWIRIYKWREYFQVDLMAGITVGVMLVPQSMSYAKLAGLQPIYGLYSGFVPIFVYAIFGSSRQLAVGPVALVSLLVSNVLGSVADSSSEVYTELAILLALMVGILECIMGLLRLGWLIRFISHSVISGFTSASAIVIGLSQAKYFLGYDIDRSSKIIPLVKSIIAGADKFSWPPFVLGSVMLAILLVMKHLGKSRKYLRFLRAAGPLTAVVLGTLFVKIFHPPSISLVGEIPQGLPKFSVPRAFEYAESLIPTAFLITGVAILESVGIAKALAAKNGYELDSNQELFGLGVSNVLGSFFSAYPTTGSFSRSAVNHESGAKSGVSAIVSGIIITCALLFLTPLFESIPQSALAAIVISAVMGLVDYQEAIFLWRVDKKDFLLWTITSSMTLFLGIEIGVLVGVGASLAFVIHESANPHIAVLGRLPGTTVYRNVKQYPEAYTYNGIVIVRIDAPIYFANISYIKDRLREYEVVVDSYTRRGPEVERINFVIIEMAPVTYIDSSAVQALKDLYQEYKLRDIQIAISNPNPDILLTLSKAGLVELIGKEWYFVRVHDAVQVCLQHVQSLKPGYESSQSSRSSTSDDKPSFFSQLFKHREESRTPTDLESGNGRPPLAPIRDSQSEPLLSKEH 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00483 706 SUPERFAMILY SpoIIaa-like 514 636 IPR036513 -
Trre13g00483 706 PANTHER SULFATE TRANSPORTER 57 644 IPR001902 GO:0016020|GO:0055085
Trre13g00483 706 Pfam STAS domain 513 632 IPR002645 -
Trre13g00483 706 CDD STAS_SulP_like_sulfate_transporter 513 629 - -
Trre13g00483 706 FunFam Sulfate transporter 31 492 639 - -
Trre13g00483 706 Pfam Sulfate permease family 89 462 IPR011547 GO:0016020
Trre13g00483 706 MobiDBLite consensus disorder prediction 646 664 - -
Trre13g00483 706 MobiDBLite consensus disorder prediction 646 706 - -
Trre13g00483 706 ProSitePatterns SLC26A transporters signature. 118 139 IPR018045 GO:0008271|GO:0008272
Trre13g00483 706 NCBIfam sulfate permease 75 632 IPR001902 GO:0016020|GO:0055085
Trre13g00483 706 MobiDBLite consensus disorder prediction 665 680 - -
Trre13g00483 706 Gene3D STAS domain 492 640 IPR036513 -
Trre13g00483 706 ProSiteProfiles STAS domain profile. 512 636 IPR002645 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00483 Trre-Chr13 3809591 3818601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00483 28 642 Inorganic Solute Cotransporters AT5G13550 77.310 0.0 981
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00483 K18059 - gmx:100794754 1148.27