Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00478 ATGGAGTCGAAAAACGAAACATCGAGTGTAATTTTAAAATTGATGGGACTTGATAAAGTTCCTTCCGAACATCATCCTGTTAGAAATAGACCGAGAGTGTTATCTGAGGATTACCTGCAGAAAGTTGCTTCTATTGGTCTCAGAAAGAAGCGTTCGTCTCATCAGCGTCGCTCTTTTGGAACGAGTACCGGCGAAAACAAAGAATCCAACAATGTTTTCAAAGTAGTTAAAACAGTAAGTAGTGACGCGAACCATAACGAGTCGCAAATTGTTGTGCATGGAGAAGCAGGATTGTATGAAATATCGAGGCTTTCGATATCTCAGTTGGATCCAAAGGATGTAACTTTGGACTCAAGAATTGTAGTTTCGAAAGTGAATCGTGGAAACGAAGAAAATGGTGAGTTTAAAAGGAACATTAGATGTAAGGTTGGTTTAAGTTATAGCTTTGCCAGAAAAGTGCCAATGACAAAACCTTTTGCTGATAATTCTGGAACTATGACTAAGGATGACTTGTTTCAGAAATATTGGGGTTTAAGTAAGAATGCATCTGAAAATTGGTCGAACCAAAATTCAAAGAATCGAAATATCAACCAGAAGGATTGTTCAGAAGATATGAACCTAAAGGCTAGCAGTGAGAAATCACCCTCTTTTTCCTCATATTTCAATAGTAACGATACCGAGAATTGTACTGACCTGCATAAGTTGAAGAAGAGATGTTACGGGAGTGATTTGTTCGAAAAGGAACATACGCTTTCTCAATTGTCATGCTCTGACAGTCAGATCTTGCAGCAGACAAGCTTAACGAATGAAGACGTGAATAACGATAAGCATGAAGATAGTAGCATGTCTAAGAAAGTTGCCATGTCTCTTGATTCATCAATTGAGATCTTGGTGTCTGAATCGAAGATTAAGGTTGTTGGTTGCTCCAATAATAATCCAACCATGGAGCAATCTGAATCAACGGTCTCTGTAATAATGTGGGGGGACAGTGATTCTTCAAGCTATGCTTCAAAGCAACAGGAGACATCGGAAATTCGAGAAGATTCTGTTTATTCACTTTGCACTGAGGCTGACACAGATTCACTTGGTACCTATCAGGGGGCATATGAACCTAGTCCAATTTCAGTTTTGGATTCCACATTTGGCGAAGACATTTCAGTAATCTCCGAATGTGGCGGTGTTGGTGTATATGATTCGTCGGAAGTGGATGACGAAGGACTTGATTTGAATGTTTCAAGCGATGAAGATTGTGAGAAAGAATCAGTACTTGATTTTGACGAAAAGAAAGATATAGTAGGGTTATCTAGAACAGAAGAAAGTAGGGACTTCTCCTATGTTGTCGAGGTCTTAACCGAGGCAGGTATATCTAACACGAGCTTGTTCAAAGATTTTTCCACATGGCACTCTGCAGAATGTCCTATTAGCCCTTCTGTCTTCGAAACCCTAGAAAAGAAATTCGGCGAGCAGCAAATTTGGAAAAGATCCGAAAGACGGCTTCTCTTTGATCGTATTAATTTTGGACTATTAGATATTCTCCATCCTTCTTTATTTATTCCAATGTGGGAAAAGTCTGTGTCGAGAAGAATGAACATTGAACCAAGCCAGAACATGATTGAGGATGAGATGTGGGGGTTGCTTGTTTCGCAAGAAAAGCAAGCCGGTAAGGAGTCAGCGGACAATATGCTTGGAGGGGAAATTAGGTCGATAGAGCTAAGTGAAGATTTTGAAGATATTGTTAGAGAGATAGTTAAGTTGTTAATAGAGGAGCTTGTAGATGATATAGTTCGTTAG 1791 0.3942 MESKNETSSVILKLMGLDKVPSEHHPVRNRPRVLSEDYLQKVASIGLRKKRSSHQRRSFGTSTGENKESNNVFKVVKTVSSDANHNESQIVVHGEAGLYEISRLSISQLDPKDVTLDSRIVVSKVNRGNEENGEFKRNIRCKVGLSYSFARKVPMTKPFADNSGTMTKDDLFQKYWGLSKNASENWSNQNSKNRNINQKDCSEDMNLKASSEKSPSFSSYFNSNDTENCTDLHKLKKRCYGSDLFEKEHTLSQLSCSDSQILQQTSLTNEDVNNDKHEDSSMSKKVAMSLDSSIEILVSESKIKVVGCSNNNPTMEQSESTVSVIMWGDSDSSSYASKQQETSEIREDSVYSLCTEADTDSLGTYQGAYEPSPISVLDSTFGEDISVISECGGVGVYDSSEVDDEGLDLNVSSDEDCEKESVLDFDEKKDIVGLSRTEESRDFSYVVEVLTEAGISNTSLFKDFSTWHSAECPISPSVFETLEKKFGEQQIWKRSERRLLFDRINFGLLDILHPSLFIPMWEKSVSRRMNIEPSQNMIEDEMWGLLVSQEKQAGKESADNMLGGEIRSIELSEDFEDIVREIVKLLIEELVDDIVR 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00478 596 MobiDBLite consensus disorder prediction 47 67 - -
Trre13g00478 596 Pfam Domain of unknown function (DUF4378) 442 593 IPR025486 -
Trre13g00478 596 PANTHER AFADIN 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00478 Trre-Chr13 3779313 3782403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00478 354 595 TRM (TON1 Recruiting Motif) Superfamily AT2G39435 29.658 1.26e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00478 - - cam:101499857 671.389