Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00465 ATGGATTCTTCTCTGTTGACTTCTTACTTCAACAACTTCCGAACCACCGCGAACTCTTTTCTCTCTCAATACGAACCTCTCACACTGGTTCTAGTTCCTCTCTTCTCTCTCTTTCTCGCAAACGTGATTCGTTCGTTTTTCAGTGTGATTCATGATAAAGGACTCAAAGCTACTGTACTAGGGTTCTTCATGAACTTCATCAAATTGATCCCTGGTGTGAAGAGTTATATTGATGCTGAAAAACAGAAGGTTGTGGATAAGTTACAATCTGATGGTAAATCTAAAAGAGAAGGTTGGAAGACAGAGTTGCCAAGCACAGGGTTGGGTACATCTGTCCTTGAGAAAATGAGTGAGGAGAAAAGAAATGATGCAATTTGGCAAGGCAAATGCTCTGGTACAGTCTACATTGGAGGAAGTGAGTCTAGTGCACATTTTTCTGTCATAAATGAGGCCTGCTCAATGTTTGCACATACCAATCCCTTGCATTTGGATGTATTCCAGAGTGTTGTGCGCTTTGAGGCAGAAGTGGTTGCAATGACAGCGGCCCTTCTTGGAAGTAAAGAAAAGACATCTGGTGGACAAATATGTGGCAATATGACATCAGGTGGGACTGAAAGTATATTATTAGCCGTTAAATCATCTCGCGACTTCATGAAATCCAAGAAAGGAATTACTAGACCCGAAATGATAATCCCTGAGTCTGGCCACTCAGCATATGACAAAGCTGCACATTATTTTAACATAAAACTATGGCGTGTTCCAGTTAACAAAAATTTTCAAGCCGATGTGAAAGCAATTCGACGTCATATTAACAAAAATACCATTTTGATTGTTGGATCTTCTCCTGGGTTTCCTCATGGGATAATAGACCCCATTGAAGAACTTGGTCAACTAGCATCAAGCTTTGGCATTTGTTTTCATGTGGACCTTTGCCTTGGTGGCTTTGTATTACCTTTTGCTCGTGAGCTTGGGTACCACATTCCACCTTATGATTTTTCTGTTAAAGGGGTTACTTCAATATCAGCGGATGTGCATAAATATGGATTAGCTCCCAAAGGAACAAGTGTAGTTCTATATAGGAACCATGAAATCAGAAAGCATCAATTTGTTGCAGTTACTGAGTGGTCCGGTGGGTTGTATGTATCTCCAACCATAGGTGGAAGCAGACCTGGAAGCCTTATTGCTGGTGCATGGGCAGCAATGATGTCTCTAGGGAAAGAAGGTTACTTGGAAAATACTAAAGCAATTATGGAAGGATCAAAAAGACTACAAAAAGGCATAGAGGAGATTCCTGAGTTATTTATCATTGGAAAACCCGATATGACAATTGTGGCTTTTGGATCAAATGTTCTCGATATATTTGAAGTCAACGATATCATGTCATCCAAAGGTTGGCATTTGAATGCATTGCAGAGACCCAACAGCATCCATATCTGTGTGACACTACAACATGTACCAGTAATTGAGGACTTTATAAAGGATTTAAAGGAATCTGTGAATACTGTGAAAGAAAATCCAGGTCCAATAAGTGGAGGACTAGCACCTATATATGGAGCCGCCGGGAAGATGCCAGATAGAGGAATGGTCCAGGAATTGCTGGTCGATTTCATGGATGGCACCTGCTAG 1626 0.4096 MDSSLLTSYFNNFRTTANSFLSQYEPLTLVLVPLFSLFLANVIRSFFSVIHDKGLKATVLGFFMNFIKLIPGVKSYIDAEKQKVVDKLQSDGKSKREGWKTELPSTGLGTSVLEKMSEEKRNDAIWQGKCSGTVYIGGSESSAHFSVINEACSMFAHTNPLHLDVFQSVVRFEAEVVAMTAALLGSKEKTSGGQICGNMTSGGTESILLAVKSSRDFMKSKKGITRPEMIIPESGHSAYDKAAHYFNIKLWRVPVNKNFQADVKAIRRHINKNTILIVGSSPGFPHGIIDPIEELGQLASSFGICFHVDLCLGGFVLPFARELGYHIPPYDFSVKGVTSISADVHKYGLAPKGTSVVLYRNHEIRKHQFVAVTEWSGGLYVSPTIGGSRPGSLIAGAWAAMMSLGKEGYLENTKAIMEGSKRLQKGIEEIPELFIIGKPDMTIVAFGSNVLDIFEVNDIMSSKGWHLNALQRPNSIHICVTLQHVPVIEDFIKDLKESVNTVKENPGPISGGLAPIYGAAGKMPDRGMVQELLVDFMDGTC 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00465 541 Gene3D Aspartate Aminotransferase, domain 1 110 504 IPR015422 GO:0003824
Trre13g00465 541 FunFam sphingosine-1-phosphate lyase 1 141 405 - -
Trre13g00465 541 Gene3D - 101 538 - -
Trre13g00465 541 SUPERFAMILY PLP-dependent transferases 77 503 IPR015424 -
Trre13g00465 541 FunFam Sphingosine-1-phosphate lyase 1 395 504 - -
Trre13g00465 541 PANTHER - 39 541 - -
Trre13g00465 541 Pfam Pyridoxal-dependent decarboxylase conserved domain 166 446 IPR002129 GO:0016830|GO:0019752|GO:0030170
Trre13g00465 541 Gene3D - 138 405 IPR015421 GO:0003824
Trre13g00465 541 FunFam Sphingosine-1-phosphate lyase 1 502 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00465 Trre-Chr13 3650521 3660284 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00465 157 499 Calmodulin-binding Proteins AT5G17330 24.722 1.15e-22 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00465 K01634 - gmx:100794395 968.378
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00465 13 3650521 3660284 Trre13g00465 13 3650521 3660284 ECH