Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00464 ATGGATTCTTCTCTGTTGACTTCTTACTTCAACAACTTCCGAACCACCGCGAACTCTTTTCTCTCTCAATACGAACCTCTCACACTGGTTCTAGTTCCTCTCTTCTCTCTCTTTCTCGCAAACGTGATTCGTTCGTTTTTCAGTGTGATTCATGATAAAGGACTCAAAGCTACTGTACTAGGGTTCTTCATGAACTTCATCAAATTGATCCCTGGTGTGAAGAGTTATATTGATGCTGAAAAACAGAAGGTTGTGGATAAGTTACAATCTGATGGTAAATCTAAAAGAGAAGGTTGGAAGACAGAGTTGCCAAGCACAGGGTTGGGTACATCTGTCCTTGAGAAAATGAGTGAGGAGAAAAGAAATGATGCAATTTGGCAAGGCAAATGCTCTGGTACAGTCTACATTGGAGGAAGTGAGTCTAGTGCACATTTTTCTGTCATAAATGAGGCCTGCTCAATGTTTGGACTATCGCCAAGAACGCAACAGGTTCAGCCCAGGTGCGATGTGTCTGCCTCAGTTATGTTGCACATGGGGCAGAATAGGTTTGCACATACCAATCCCTTGCATTTGGATGTATTCCAGAGTGTTGTGCGCTTTGAGGCAGAAGTGGTTGCAATGACAGCGGCCCTTCTTGGAAGTAAAGAAAAGACATCTGGTGGACAAATATGTGGCAATATGACATCAGGTGGGACTGAAAGTATATTATTAGCCGTTAAATCATCTCGCGACTTCATGAAATCCAAGAAAGGAATTACTAGACCCGAAATGATAATCCCTGAGTCTGGCCACTCAGCATATGACAAAGCTGCACATTATTTTAACATAAAACTATGGCGTGTTCCAGTTAACAAAAATTTTCAAGCCGATGTGAAAGCAATTCGACGTCATATTAACAAAAATACCATTTTGATTGTTGGATCTTCTCCTGGGTTTCCTCATGGGATAATAGACCCCATTGAAGAACTTGGTCAACTAGCATCAAGCTTTGGCATTTGTTTTCATGTGGACCTTTGCCTTGGTGGCTTTGTATTACCTTTTGCTCGTGAGCTTGGGTACCACATTCCACCTTATGATTTTTCTGTTAAAGGGGTTACTTCAATATCAGCGGATGTGCATAAATATGGATTAGCTCCCAAAGGAACAAGTGTAGTTCTATATAGGAACCATGAAATCAGAAAGCATCAATTTGTTGCAGTTACTGAGTGGTCCGGTGGGTTGTATGTATCTCCAACCATAGGTGGAAGCAGACCTGGAAGCCTTATTGCTGGTGCATGGGCAGCAATGATGTCTCTAGGGAAAGAAGGTTACTTGGAAAATACTAAAGCAATTATGGAAGGATCAAAAAGACTACAAAAAGGCATAGAGGAGATTCCTGAGTTATTTATCATTGGAAAACCCGATATGACAATTGTGGCTTTTGGATCAAATGTTCTCGATATATTTGAAGTCAACGATATCATGTCATCCAAAGGTTGGCATTTGAATGCATTGCAGAGACCCAACAGCATCCATATCTGTGTGACACTACAACATGTACCAGTAATTGAGGACTTTATAAAGGATTTAAAGGAATCTGTGAATACTGTGAAAGAAAATCCAGGTCCAATAAGTGGAGGACTAGCACCTATATATGGAGCCGCCGGGAAGATGCCAGATAGAGGAATGGTCCAGGAATTGCTGGTCGATTTCATGGATGGCACCTGCTAG 1710 0.4152 MDSSLLTSYFNNFRTTANSFLSQYEPLTLVLVPLFSLFLANVIRSFFSVIHDKGLKATVLGFFMNFIKLIPGVKSYIDAEKQKVVDKLQSDGKSKREGWKTELPSTGLGTSVLEKMSEEKRNDAIWQGKCSGTVYIGGSESSAHFSVINEACSMFGLSPRTQQVQPRCDVSASVMLHMGQNRFAHTNPLHLDVFQSVVRFEAEVVAMTAALLGSKEKTSGGQICGNMTSGGTESILLAVKSSRDFMKSKKGITRPEMIIPESGHSAYDKAAHYFNIKLWRVPVNKNFQADVKAIRRHINKNTILIVGSSPGFPHGIIDPIEELGQLASSFGICFHVDLCLGGFVLPFARELGYHIPPYDFSVKGVTSISADVHKYGLAPKGTSVVLYRNHEIRKHQFVAVTEWSGGLYVSPTIGGSRPGSLIAGAWAAMMSLGKEGYLENTKAIMEGSKRLQKGIEEIPELFIIGKPDMTIVAFGSNVLDIFEVNDIMSSKGWHLNALQRPNSIHICVTLQHVPVIEDFIKDLKESVNTVKENPGPISGGLAPIYGAAGKMPDRGMVQELLVDFMDGTC 569
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00464 569 Gene3D Aspartate Aminotransferase, domain 1 434 532 IPR015422 GO:0003824
Trre13g00464 569 FunFam sphingosine-1-phosphate lyase 1 168 433 - -
Trre13g00464 569 Gene3D - 533 566 - -
Trre13g00464 569 Gene3D - 179 433 IPR015421 GO:0003824
Trre13g00464 569 FunFam Sphingosine-1-phosphate lyase 1 530 568 - -
Trre13g00464 569 PANTHER - 39 569 - -
Trre13g00464 569 FunFam Sphingosine-1-phosphate lyase 1 423 532 - -
Trre13g00464 569 Pfam Pyridoxal-dependent decarboxylase conserved domain 197 474 IPR002129 GO:0016830|GO:0019752|GO:0030170
Trre13g00464 569 SUPERFAMILY PLP-dependent transferases 181 531 IPR015424 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre13g00464 Trre-Chr13 3650521 3660284 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00464 143 527 Calmodulin-binding Proteins AT5G17330 24.450 4.55e-24 103
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00464 K01634 - gmx:100794395 953.355