Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00458 ATGAAGAAAACTTATCATCACTTTAACTTGACACTTCTCACAACTCTCCTGATCTCACTTACAAATTTCCTAACATGTTTTGCAAACAACGACGTAACGGTTCAGTTAAACGACGATGTCCTCGGTTTAATGGTGTTCAAATCAGACCTATATGACCCTTCATCATATCTCTCTTCATGGAATGAAGATGATATCAATCCATGTTCATGGCAATATGTTAAATGCAATCCACAAACTCAAACAGTTTCTGAACTTTCTTTAGATGGTTTAGGTTTATCAGGTAAAATAGGAAGAGGTCTTGAAAAACTACAACATTTAGTAACACTTTCACTTTCTCATAACAATTTCAGTGGCACTATTAATCCTTCACTAACACTTTCAAACTCTCTTCAAAAACTTAACCTTAGTCATAACTCATTTTCTGGTCAATTACCTAACTCTTTCATCAACATGAGTTCAATGAGATTCATTGATCTATCACATAACTCATTCTCGGGACAATTGTTCGAAACGTTTTTCGATAACTGTTTCTTCCTTCGTAGCGTTTCGTTCGCTATGAATTCATTTGAAGGACAAATTCCTATGTCATTATCTAAATGTTCTTTGTTGAATAGTGTTAATCTTTCAAATAATCATTTTAGTGGATATGTTGATTTTTCTAGTGTTTGGTCATTGAATAGGCTTAGAAACTTAGATCTATCAAACAATGCTTTATCAGGTAACTTGGTTAATGGAATTTCAACTTTGCATAACTTGAAAGAGTTAATGTTACAAAATAATCAGTTTTCAGGTTCATTACCAAATGATATTGGATTTTGTCTTCATTTGATTAAGGTTGATTTTAGTACTAATCAGTTTAGTAGTGAATTACCTGAGTCATTAGGAAGATTAAACTCTTTAAGCTATTTAAGAGTTTCAAATAATCTCTTATCTGGTGAATTTCCTCAATGGATTGGTAACTTGACTAGTTTGGAACATTTGGACTTATCTAATAATCTATTATATGGAAACATTCCTTTGTCATTGGTTTCATGCACAATGTTATCTAAGATTTTTCTTAGAGGGAATAGTTTCAATGGTACTATACCTGAGGGATTGTTTGGTTTAGGATTAGAGGAAATGGATTTTTCTCATAATCAATTAATAGGTTCAATTCCAGCAGGGTCTAATAGGCTATTAGAAACTCTTACTAAGTTGGATCTTTCAGTTAATCATCTTCAAGGGAATATTCCTGCAGAAATTGGTCTACTTTCAAAGTTGAGATACTTGAATTTGTCTTGGAATGATCTTCATTCTCAGATTCCACCTGAGTTTGGTCTACTTCAGAATCTAATGGTTTTAGATCTTCGTAATAGCGCGATGTTTGGTTCGATTCCGGAAGATACATGTGATTCAGGCAATTTGGCTGTTCTTCAACTTGATGGAAATTATTTGAAAGGATCTATTCCAGAAGAGATTGGGAATTGTTCATCTCTTTACTTGTTGAGTTTGTCAAACAATAATTTGACAGGTCCAATCCCAAAATCAATGTCAAAGCTAACTAAGCTCAAAATCCTCAAGTTAGAATTCAATGAACTTAGTGGAGAACTACCAATGGAGTTAGGAAAGCTTCAAAATCTTCTTGCTGTCAACATATCACATAACAGCCTCACAGGAAGGCTTCCAATGGGTAGCATTTTTCAAAACTTAGACAAAAGTTCTTTGGAAGGAAACTATGGTCTTTGCTCACCCTTGCTTCAAGGTCCATGCAAAATGAATGTTCCAAAACCTATAGTTCTTGATCCACATGGCTTTGACAACCAAATGAATCCTCAAAGACCGAGAAATGAATCATCCGAGTCTAGTAGTCCAATTCATCATCACAGGTTCCTTAGTATTTCGGCTATTATAGCAATTGCAGCTTCTTTTCTTATTGTCTTAGGAGTTATTGCTATTAGTCTAGTTAATGCTTCTGTAAGGAGAAAGCTAGCATTTGTGGAAAGTGCTTTGGAAAGTATGTGTTCGAGCTCTTCGAGATCAGGAGCACCGGCCACAGGTAAACTCATTCTGTTTGATTCACAATCTTCACAAGATTGGATTAGCAATCCAGAAAACTTGCTCAACAAGGCATCTGAAATCGGTGAAGGAGTTTTCGGAACAGTTTACAAAGTTCCATTAGGATCACAACAAGGAAGAAATGTTGCAGTCAAGAAGCTTATCACATCAAACATAGTCCAATTTTCGGAAGACTTCGATAGGGAAGTTAGAATTCTAGGTAAAGCCAGACACCCTAATTTGATAGCATTGAAAGGTTACTATTGGACTCCTCAGCTTCAGCTTTTAGTATCTGAATTTGCACCAAATGGTAACTTGCAATCCAAGTTACACGAAAAGCTTCCTTCGAGCCCTTCACTTTCTTGGCCTAATAGATTCAAGATTTTACTTGGAACAGCAAAGGGACTTGCTCATTTGCATCATTCGTTCCGGCCACCAATCATTCACTACAACATAAAACCTAGCAACATCTTACTTGATGAAAACTTCAACCCTAAAATATCAGATTTTGGGTTAGCTAGGCTTTTAACAAAACTAGACAAGCATGTGATGAGTAACAGGTTTCAAAGTGCATTAGGTTATGTAGCACCTGAATTAGCTTGTCAAAGCTTAAGGGTCAATGAGAAATGCGATGTCTATGGTTTCGGTGTGATGATACTCGAGTTAGTGACAGGTAGAAGACCAGTGGAGTATGGTGAAGATAATGTGTTGATATTGAATGATCATGTGAGGGTTTTACTTGAACATGGTAATGTTTTGGAGTGTGTTGATCCAAGTTTGATGAATGAATTTCCTGAAGATGAGGTTTTACCTGTCTTGAAGCTTGCAATGGTGTGCACTTCTCAAATACCATCTAGTAGGCCTACAATGGCTGAAGTTGTGCAAATATTGCAAGTCATTAAAACTCCTGTTCCAGGGTGGGTGGGGTAG 2964 0.3603 MKKTYHHFNLTLLTTLLISLTNFLTCFANNDVTVQLNDDVLGLMVFKSDLYDPSSYLSSWNEDDINPCSWQYVKCNPQTQTVSELSLDGLGLSGKIGRGLEKLQHLVTLSLSHNNFSGTINPSLTLSNSLQKLNLSHNSFSGQLPNSFINMSSMRFIDLSHNSFSGQLFETFFDNCFFLRSVSFAMNSFEGQIPMSLSKCSLLNSVNLSNNHFSGYVDFSSVWSLNRLRNLDLSNNALSGNLVNGISTLHNLKELMLQNNQFSGSLPNDIGFCLHLIKVDFSTNQFSSELPESLGRLNSLSYLRVSNNLLSGEFPQWIGNLTSLEHLDLSNNLLYGNIPLSLVSCTMLSKIFLRGNSFNGTIPEGLFGLGLEEMDFSHNQLIGSIPAGSNRLLETLTKLDLSVNHLQGNIPAEIGLLSKLRYLNLSWNDLHSQIPPEFGLLQNLMVLDLRNSAMFGSIPEDTCDSGNLAVLQLDGNYLKGSIPEEIGNCSSLYLLSLSNNNLTGPIPKSMSKLTKLKILKLEFNELSGELPMELGKLQNLLAVNISHNSLTGRLPMGSIFQNLDKSSLEGNYGLCSPLLQGPCKMNVPKPIVLDPHGFDNQMNPQRPRNESSESSSPIHHHRFLSISAIIAIAASFLIVLGVIAISLVNASVRRKLAFVESALESMCSSSSRSGAPATGKLILFDSQSSQDWISNPENLLNKASEIGEGVFGTVYKVPLGSQQGRNVAVKKLITSNIVQFSEDFDREVRILGKARHPNLIALKGYYWTPQLQLLVSEFAPNGNLQSKLHEKLPSSPSLSWPNRFKILLGTAKGLAHLHHSFRPPIIHYNIKPSNILLDENFNPKISDFGLARLLTKLDKHVMSNRFQSALGYVAPELACQSLRVNEKCDVYGFGVMILELVTGRRPVEYGEDNVLILNDHVRVLLEHGNVLECVDPSLMNEFPEDEVLPVLKLAMVCTSQIPSSRPTMAEVVQILQVIKTPVPGWVG 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00458 987 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Trre13g00458 987 FunFam Inactive leucine-rich repeat receptor-like protein kinase 301 586 - -
Trre13g00458 987 Pfam Protein kinase domain 702 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00458 987 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 694 778 - -
Trre13g00458 987 Gene3D Ribonuclease Inhibitor 274 344 IPR032675 -
Trre13g00458 987 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 224 342 IPR046959 -
Trre13g00458 987 SUPERFAMILY RNI-like 109 548 - -
Trre13g00458 987 Gene3D Ribonuclease Inhibitor 348 589 IPR032675 -
Trre13g00458 987 ProSitePatterns Protein kinases ATP-binding region signature. 706 731 IPR017441 GO:0005524
Trre13g00458 987 FunFam Leucine-rich repeat receptor-like protein kinase 36 174 - -
Trre13g00458 987 CDD STKc_IRAK 706 976 - -
Trre13g00458 987 ProSiteProfiles Protein kinase domain profile. 700 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00458 987 SMART LRR_typ_2 513 537 IPR003591 -
Trre13g00458 987 SMART LRR_typ_2 321 345 IPR003591 -
Trre13g00458 987 SMART LRR_typ_2 249 273 IPR003591 -
Trre13g00458 987 SMART LRR_typ_2 441 465 IPR003591 -
Trre13g00458 987 SMART LRR_typ_2 417 440 IPR003591 -
Trre13g00458 987 SMART LRR_typ_2 103 128 IPR003591 -
Trre13g00458 987 ProSiteProfiles Leucine-rich repeat profile. 419 441 IPR001611 GO:0005515
Trre13g00458 987 SUPERFAMILY Protein kinase-like (PK-like) 695 979 IPR011009 -
Trre13g00458 987 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 779 984 - -
Trre13g00458 987 Gene3D Phosphorylase Kinase; domain 1 685 778 - -
Trre13g00458 987 MobiDBLite consensus disorder prediction 594 616 - -
Trre13g00458 987 Pfam Leucine rich repeat 371 430 IPR001611 GO:0005515
Trre13g00458 987 Pfam Leucine rich repeat 105 163 IPR001611 GO:0005515
Trre13g00458 987 Pfam Leucine rich repeat 467 526 IPR001611 GO:0005515
Trre13g00458 987 Gene3D Ribonuclease Inhibitor 173 273 IPR032675 -
Trre13g00458 987 Gene3D Ribonuclease Inhibitor 37 172 IPR032675 -
Trre13g00458 987 Gene3D Transferase(Phosphotransferase) domain 1 779 982 - -
Trre13g00458 987 PRINTS Leucine-rich repeat signature 228 241 - -
Trre13g00458 987 PRINTS Leucine-rich repeat signature 321 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00458 Trre-Chr13 3605074 3608541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00458 2 983 Receptor kinase-like Gene Family AT3G28040 62.266 0.0 1206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Trre13g00458 Pkinase 8.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00458 - - gmx:100795810 1465.67