Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00447 ATGACTCAGGCTGTGGAAGTGTTGAATCGATATGGAACGGATCTGGTTGGAGAAGGGAGGGGTTCGGATTCGGAGTGTTTAGCTGGTTTTGAATGTTTTCTGAATATTGTGAGAGCACTAGGAATGGGATCTTGTATATCAGAGGGTTCTGGTTCGCCGCCTCTGCTAACTTATTCGCAGGAATTGAATGTCGATGGTGGGAAGAGAAGAAGGTTAAGGGGTTCCTCTACAATGGATTATAAGGTGCCTGGGAGAATGTTCTTAAATGGGTCAAGTGAGATTGCTTCTATGTATTGTAAGCAAGGTAAAAAAGGAATCAACCAAGATGCTATGCTTGTTTGGGAGAACTTTGGTTCAAAGGAGGATACCGTTTTTTGTGGTGTTTTTGATGGTCATGGACCTTATGGCCATAGGGTTGCAAAAAAAGTTAGGGATTCCTTCCCTTTAAAGCTTAGTGCACAATGGGATTTGCATTGTAAGAATAAAGATGGATTCAATGATCAAAATGGTGCTGCCACAAGTTATAATTCTGGAGAGCAAATTAGACTGGTTGACGAGAACTTTGATCACGAGTTCGATGAAACATATACTATCTCAGCACTAAGAGAATCCTATTTGAAGGCTAGCAAGATAATGGACAAAGAACTGAAACTGCATCGTGATATTGATTGCTTTTGCAGTGGGACTACAGCAGTTACCTTGATCAAGCAGGGGCCGGATCTTGTTGTCGGAAATGTGGGAGATTCAAGAGCTGTATTGGGAACCCGAGATCATGACAATTCTCTTATTGCTGTTCAGTTGACCATTGACCTTAAGCCTAATCTTCCAAAGGAAGAAGAGAGGATTAAGCTTCGTAAAGGAAGGGTTTTTTCCCTGAAGAATGAACCAGATGTGGCTAGAGTTTGGCTGCCTAACTCTGATTTCCCAGGTCTGGCTATGGCACGGGCTTTTGGAGATTTTTGCCTGAAGGACGTTGGATTGATTTCTGTTCCAGATGTTTCATATCGCCGCCTTACAGAGAAGGATGAATTTGTTGTGTTAGCAACAGATGGGATTTGGGATGTTTTATCAAATGAAGAAGTTGTGGAGATTGTAGCAGCTGCACCACGGTCTACTGCTGCTCGAGTACTGGTTGAGTCAGCTGTTCGTTCTTGGAGGGCAAAATTCCCTTTCTGTAAGGTTGATGATTGTGCTGCAGTGTGCCTCTTCCTTAATTCAAATACAGAGTTGCAGGAAGAACATACCACAGACGAGTTGACGCCAGATGCATCAAAGAATCCAGTTGATCAATCATCTCTACCTAGTGAGAATGGAATTGGAGTGGAAGCCGAAAAAAAGCCGTAA 1344 0.4286 MTQAVEVLNRYGTDLVGEGRGSDSECLAGFECFLNIVRALGMGSCISEGSGSPPLLTYSQELNVDGGKRRRLRGSSTMDYKVPGRMFLNGSSEIASMYCKQGKKGINQDAMLVWENFGSKEDTVFCGVFDGHGPYGHRVAKKVRDSFPLKLSAQWDLHCKNKDGFNDQNGAATSYNSGEQIRLVDENFDHEFDETYTISALRESYLKASKIMDKELKLHRDIDCFCSGTTAVTLIKQGPDLVVGNVGDSRAVLGTRDHDNSLIAVQLTIDLKPNLPKEEERIKLRKGRVFSLKNEPDVARVWLPNSDFPGLAMARAFGDFCLKDVGLISVPDVSYRRLTEKDEFVVLATDGIWDVLSNEEVVEIVAAAPRSTAARVLVESAVRSWRAKFPFCKVDDCAAVCLFLNSNTELQEEHTTDELTPDASKNPVDQSSLPSENGIGVEAEKKP 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00447 447 SMART PP2C_4 88 402 IPR001932 -
Trre13g00447 447 Pfam Protein phosphatase 2C 111 382 IPR001932 -
Trre13g00447 447 Gene3D - 90 413 IPR036457 -
Trre13g00447 447 MobiDBLite consensus disorder prediction 421 437 - -
Trre13g00447 447 SUPERFAMILY PP2C-like 92 406 IPR036457 -
Trre13g00447 447 PANTHER PROTEIN PHOSPHATASE 92 402 IPR015655 GO:0004722|GO:0006470
Trre13g00447 447 CDD PP2Cc 94 404 IPR001932 -
Trre13g00447 447 ProSiteProfiles PPM-type phosphatase domain profile. 94 404 IPR001932 -
Trre13g00447 447 MobiDBLite consensus disorder prediction 412 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00447 Trre-Chr13 3517664 3521944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00447 42 407 PP2C-type Phosphatase Gene Family AT3G02750 55.300 2.97e-146 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00447 - - gmx:100810538 720.694