Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00444 ATGGCATTGCCTCCAAATTCCGACGAAAGCGGCGGAGGAGTTGCCACAGAAGAAGATACCACCATTGATATCCACACAACCCATGGAACCCCTATTCGTTACCTTCCTCTCGATCATCTCTACTCTTCTACATCACCTTGTAGTGGTTCTTCCAATGTCATGTCAAAAAAAGTTAAAGCTCGCAAACTCAACAACGAGATTCAGTTCAATAATGGCGAAATCGATTCACCGGTTAACGATGATGAGGATGACGAGAAAGAGATTTCGAAAACAACAACGTCTTCTATGGTGGTTTATGCTAAACCACCGGTTTTGTATGTTTACTCTCGGAGACGAAAGAGGAGTTCTTTTCCGGCGTCGGATTCTGAGAGGACGGCGTTGAAAAGGAGGAGAATTGGGTGTAATGAGTTGGAGAGCTTAGGGATTGACTGGAATGCATTGGGGAAATTCGATGGACCTAGATTGAGAGAATGTCGCAATCAAATTGGGAATTCTGCTGGATTTGATGGGAAGAGCAGCAATAAGAAGAAGTTTGGTTCTGGTGTTAAGCTTCCTAAGTTGATGCCTGATTCTTACACTTTGAAGAGATGGGTCACGTTGAGCTTTGATGATGCTGATCCCGAGGCTTTTGTCGGACTGAGATGCAAGGTTTACTGGCCCATGGATTTAAAATCATACACTGGCCAAGTTAAAGGTTACGATAGGGAAGCTAAGATACATCATATCGAGTATGATGATGGAGACGAGGAAAAATTAGTTCTTTCAAATGAAAATGTTAAATACCATGTTTCCCGCAACGACATGCAACATTTAAAATTGAGTTACGCCAAAGTTCGTGACAATAATGTCTCTGATTATGATGTTGAAGAGATGCTCGCACTGGCTGCAAGTATGAACGACTGTCAAGACTTTGAGCCTGGGGATATCGTATGGGCCAAGCTTACAGGTTATGCAATGTGGCCAGCTGTTGTTTTGGATGAATCACTTGCTAGCAATTGTAAGGGTTTAAAAACGTTCATAGGGGGGAGATCAGTTCCTGTCCAATTTTTTGGCACTCACGACTTTGCAAGAGTTCGAGTGCAACAGGTGAAATCATTTCTCAGTGGACTCCTGACCGATCTGCACTCAAAGTGCAAGAAGCAGAGTTTCATTGAAGGTATAGAAGAGGCAAAAAGGTATTTAAGTGCACTGGAGCTTCCTCTGGAGATGATAGAATTGCGGAAAAGATGTACAGCTGATGACCGTAACAATGTAAGTGGAGAGGATGGAGGATGTACAGATTCGGGTGAAGACTATATAAATGACAAAGGGACTTGGGAATCACTTCAAAACACCGTCTCTTTTCCTTATGAAGTGGGAGACTTGCAGATTCTAAGCCTTGGAAAGATAGTTGGAGATTCTACAGCTTTTCGGAATGGAAAATCCATCTGGCCTGAAGGGTATACTGCAATGAGGAAGTTCACTTCAGTTACAGACCCCAAAGTATCCGTTCCGTATAAGATGGAGGTTTTGAGAGATCCAGAGTCCAGATTCAGACCACTATTTAGAGTGACAGTTGATGGTGGTGAGCAGTTCAATGGTTATACACCGTCTACTTGCTGGAATCAAGTTTACGAAAGGATAAAGAAATTGGAAAAGGTTGTTTCTGAAGGTTCTGTTGCTGATGGCGTGGTAGAAAGTGGCTATGAATCTGGCTCTGATATGTTCGGTTTCTCCAAACCGGAAGTGGCTGAACTTATAAAGGGATTATCTAAATCCAAAATCTCTTTGAAGAAATCAATCTGCAAGTCAGGTTCCAGATTGCCTGTTGGCTATAGACAAGTTCATATTAATTGGTTTGATCTCGATAAGTGCAATGTGTGCCATATGGATGAGGAGTACGAGAACAATCTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCTAGATGCTATGGAGAACTGGAACCTGTTAATGGAGTGCTATGGTTATGCAACTTGTGCCGTTCGGGTGCTCCTCCCCCACCTTGTTGCTTATGTCCACTCATAGGTGGTGCAATGAAGCCTACAACGGATGGCCGGTGGGCTCATTTGGCTTGTGCCATGTGGATACCTGAAACTTGCTTAGCTGATGTCAAAAGAATGGAGCCTATTGATGGTTTGAGTAGAATTAGCAAGGACCGTTGGAAGTTGTTATGCAGCATATGTGGTGTATCTTATGGTGCCTGCATCCAATGTTCAAACAATTCTTGTCGAGTAGCATATCATCCACTCTGTGCACGTGCAGCTGGTCTTTGTGTTGAGCTTGAGAATGAGGACAGGCTCTATCTACTTGCCGTAGATGATGATGAGGATCAGTGCATTCGCTTACTTTCTTTCTGCAAGAAACATAGGCAGCCATCTCATGATCATTCTGTAGCTGACGAACGTGTTCCGGTTATTGGTCAATGTTCAGACTATGAACCACCACCCAATCCATCTGGTTGTGCCCGAAGTGAGCCATATGATTACTTTGGTCGGAGAGGTCGAAAAGAACCTGAAGCACTTGCAGCTTCATCGCTGAAACGTTTGTTTGTGGAGAATCAACCTTACTTAGTTGGTGGATACTGCCAACATGGGTTGTTGAACGACCTAGAGCCTTCTGGCAGAGGAGTCTGCTCTAAATTCTTTTGTAGCGAACAGAGACTGAGAACCTCCATGGTTGATGCTGCTGACAGCATACTTACTGTTGCTGAGAAATATAAGTACATGAGGGAAACCTTTCGGAAACAGTTAGCATTTGGGAAATCAAGAATTCATGGATTTGGCATCTTTGCAAAGCATCCATATAAAGGCGGAGACATGGTGATTGAATACACTGGTGAACTTGTTAGACCTTCTATAGCTGACCGGAGAGAGCGATTTATATACAATTCTTTGGTGGGTGCTGGAACATATATGTTTCGGATTGATGATGAACGTGTCATCGATGCCACTAGAGCAGGAAGCATTGCTCATTTAATTAATCATTCCTGTGCACCAAATTGCTATTCAAGAGTCATTAGTGTTAACGGCGATGAGCATATTATAATATTTGCAAAGAGGGACATTAAACAATGGGAAGAGCTTACATATGATTATAGATTTTTCTCAATAGATGAACGGCTTTCCTGTTACTGTGGCTTCCCAAAATGTCGAGGTGTAGTAAATGATACTGAGGCAGAAGAGCGAGCTGCTACTGTATATGCACCACGGAGTGAATTAGTTGATTGGAAAGGAGAATGA 3249 0.4297 MALPPNSDESGGGVATEEDTTIDIHTTHGTPIRYLPLDHLYSSTSPCSGSSNVMSKKVKARKLNNEIQFNNGEIDSPVNDDEDDEKEISKTTTSSMVVYAKPPVLYVYSRRRKRSSFPASDSERTALKRRRIGCNELESLGIDWNALGKFDGPRLRECRNQIGNSAGFDGKSSNKKKFGSGVKLPKLMPDSYTLKRWVTLSFDDADPEAFVGLRCKVYWPMDLKSYTGQVKGYDREAKIHHIEYDDGDEEKLVLSNENVKYHVSRNDMQHLKLSYAKVRDNNVSDYDVEEMLALAASMNDCQDFEPGDIVWAKLTGYAMWPAVVLDESLASNCKGLKTFIGGRSVPVQFFGTHDFARVRVQQVKSFLSGLLTDLHSKCKKQSFIEGIEEAKRYLSALELPLEMIELRKRCTADDRNNVSGEDGGCTDSGEDYINDKGTWESLQNTVSFPYEVGDLQILSLGKIVGDSTAFRNGKSIWPEGYTAMRKFTSVTDPKVSVPYKMEVLRDPESRFRPLFRVTVDGGEQFNGYTPSTCWNQVYERIKKLEKVVSEGSVADGVVESGYESGSDMFGFSKPEVAELIKGLSKSKISLKKSICKSGSRLPVGYRQVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLSRISKDRWKLLCSICGVSYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLYLLAVDDDEDQCIRLLSFCKKHRQPSHDHSVADERVPVIGQCSDYEPPPNPSGCARSEPYDYFGRRGRKEPEALAASSLKRLFVENQPYLVGGYCQHGLLNDLEPSGRGVCSKFFCSEQRLRTSMVDAADSILTVAEKYKYMRETFRKQLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPSIADRRERFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLSCYCGFPKCRGVVNDTEAEERAATVYAPRSELVDWKGE 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00444 1082 CDD Tudor_Agenet_AtEML-like 211 261 - -
Trre13g00444 1082 Pfam F/Y-rich N-terminus 453 503 IPR003888 GO:0005634
Trre13g00444 1082 ProSiteProfiles Post-SET domain profile. 1042 1058 IPR003616 -
Trre13g00444 1082 FunFam Histone-lysine N-methyltransferase 667 795 - -
Trre13g00444 1082 PANTHER PHD FINGER PROTEINS 41 1064 - -
Trre13g00444 1082 SUPERFAMILY FYVE/PHD zinc finger 610 679 IPR011011 -
Trre13g00444 1082 Gene3D - 204 257 - -
Trre13g00444 1082 FunFam Histone-lysine N-methyltransferase 851 1075 - -
Trre13g00444 1082 SMART set_7 918 1042 IPR001214 GO:0005515
Trre13g00444 1082 Pfam PHD-finger 630 664 - -
Trre13g00444 1082 ProSitePatterns Zinc finger PHD-type signature. 618 663 IPR019786 -
Trre13g00444 1082 SMART PWWP_4 304 367 IPR000313 -
Trre13g00444 1082 ProSiteProfiles SET domain profile. 918 1036 IPR001214 GO:0005515
Trre13g00444 1082 MobiDBLite consensus disorder prediction 1 23 - -
Trre13g00444 1082 ProSiteProfiles FYR domain FYRN motif profile. 447 506 IPR003888 GO:0005634
Trre13g00444 1082 Gene3D SET domain 881 1071 IPR046341 -
Trre13g00444 1082 SMART fyrn_3 462 506 IPR003888 GO:0005634
Trre13g00444 1082 Pfam F/Y rich C-terminus 512 584 IPR003889 GO:0005634
Trre13g00444 1082 ProSiteProfiles Zinc finger PHD-type profile. 615 666 IPR019787 -
Trre13g00444 1082 SUPERFAMILY Tudor/PWWP/MBT 299 399 - -
Trre13g00444 1082 ProSiteProfiles FYR domain FYRC motif profile. 510 596 IPR003889 GO:0005634
Trre13g00444 1082 CDD PWWP_AtATX1-like 305 400 - -
Trre13g00444 1082 Pfam PWWP domain 307 394 IPR000313 -
Trre13g00444 1082 SMART fyrc_3 514 598 IPR003889 GO:0005634
Trre13g00444 1082 SUPERFAMILY SET domain 916 1055 IPR046341 -
Trre13g00444 1082 Gene3D - 448 589 - -
Trre13g00444 1082 CDD ePHD_ATX1_2_like 678 792 IPR041956 -
Trre13g00444 1082 ProSiteProfiles Extended PHD (ePHD) domain profile. 669 793 IPR034732 -
Trre13g00444 1082 CDD SET_SETD1-like 905 1054 - -
Trre13g00444 1082 ProSiteProfiles PWWP domain profile. 306 369 IPR000313 -
Trre13g00444 1082 SMART PHD_3 727 793 IPR001965 -
Trre13g00444 1082 SMART PHD_3 617 664 IPR001965 -
Trre13g00444 1082 Gene3D - 294 402 - -
Trre13g00444 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 609 663 IPR013083 -
Trre13g00444 1082 Pfam PHD-zinc-finger like domain 671 792 - -
Trre13g00444 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 664 795 IPR013083 -
Trre13g00444 1082 Pfam SET domain 929 1035 IPR001214 GO:0005515
Trre13g00444 1082 CDD PHD_ATX1_2_like 617 663 IPR042010 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00444 Trre-Chr13 3473720 3483900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00444 618 763 C2H2 Transcription Factor Family AT3G14740 39.735 6.67e-27 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre13g00444 zf-HC5HC2H_2 3.2e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00444 - - gmx:100806736 1779.61