Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00441 ATGACCATGGTTCCTTCTCAAAGCAACAAACAAAATTACAAAACTATTAATGGTGATTATGTTTTCTACAACAATACAACAAGTGCTATGAACCAATTTCAATTTGTTGAAGACTACAACAACTACAATAATTGTTTAAGATCTGAATTTTTGTTGAGGCACATGGCTGAAGAAGAGGAATCATCATCAAGACTCAACACTATAACCACTACTCATCACAACGATTCTGAACCCGAACCCGAGCCAGAAACTATTTCTACTTCAAAGGAAGACGAAGAACAAGAACAAGAAAGAGAAGCAAATAACAATAATACCAACAACAATAATTGGCTTCAGTTAAGCATAGGTAACACGGTCGTGACAACAACAACAAAACACGATCGTGGTCACAACCAAGCTCCAACAAGCAGTTCAGGCTTATTGGAGCTTGAGTTATTACCAACAAATTGGACTTCTTCACGGCCCAATTTAGAGCAACCATCGATCAGAAGTTGCTCAACTTTTAATTCTTCTTTGTTTTTAGAACAAACAACATCCTCTTTTTCATCGTCATCGATGTCCATATCTATGTCCATGCCGAGCGGGCCAACAACGTATGGTCATCAACAACAACATCAACATCTAGTACCACATAACTGGGCATTTGGTCCATTGCAACTACCACATTCTATGGCAATTATGCATTCTTCTACATCTTATATTCCCTCTTTATCTTCTTCGTCGCAATCTTGTTCTTCTTTAAGGCCTTCTTTAGGACCTAATTATTATCCTCAATATCATCATGCATCACCCTTTTATTTTCCTTCATCGTCTTCATCTTCTTCTGGATTTGATCAATTTGATGCGGCTGGACCTAGCTCATCATCTCATATCGCTTTTCGCGTAGTTGATCCTCCTCGTAGACCTCATTCCGGAATTTGGTTTATGCTACAAGCCTCCCAAAACCAAGTGAAAGAACCATGCTTGCCACAAATACCTAAGAACTATCTTAGAATCAAAGATGGAAGAATGACAGTTCGGTTGCTATTCAAGTATTTGGTTAGTAAACTCAAACTGGAGAGCGAATCAGAGATAGAGATAACATGCAGAGGACAACAACTTTTACCTTTCTTGACGTTGCAGCATGTGAGGGATAATATTTGGACACCAAGGGACACCACAACAAGGCCTTTGCTTTCAGATTCCTCAACAGAAGATCATGTTATGGTGCTTCATTATGGTAGAAGCACTTCTCAAAATTAA 1242 0.3865 MTMVPSQSNKQNYKTINGDYVFYNNTTSAMNQFQFVEDYNNYNNCLRSEFLLRHMAEEEESSSRLNTITTTHHNDSEPEPEPETISTSKEDEEQEQEREANNNNTNNNNWLQLSIGNTVVTTTTKHDRGHNQAPTSSSGLLELELLPTNWTSSRPNLEQPSIRSCSTFNSSLFLEQTTSSFSSSSMSISMSMPSGPTTYGHQQQHQHLVPHNWAFGPLQLPHSMAIMHSSTSYIPSLSSSSQSCSSLRPSLGPNYYPQYHHASPFYFPSSSSSSSGFDQFDAAGPSSSSHIAFRVVDPPRRPHSGIWFMLQASQNQVKEPCLPQIPKNYLRIKDGRMTVRLLFKYLVSKLKLESESEIEITCRGQQLLPFLTLQHVRDNIWTPRDTTTRPLLSDSSTEDHVMVLHYGRSTSQN 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00441 413 PANTHER RING FINGER PROTEIN 1 409 IPR044171 GO:0007275
Trre13g00441 413 MobiDBLite consensus disorder prediction 74 99 - -
Trre13g00441 413 Gene3D - 300 406 - -
Trre13g00441 413 MobiDBLite consensus disorder prediction 61 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00441 Trre-Chr13 3433342 3446339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00441 322 406 C3H Transcription Factor Family AT3G23060 39.326 4.93e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00441 - - lja:Lj1g3v3138970.1 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00441 13 3433342 3446339 Trre13g00441 13 3433342 3446339 ECH