Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00438 ATGTCTTCTCAACTTTGTGGTTGTTCCATTGCATTGTGTGTTGCAATTCTACTTCAACTATGTTCCTTAGGAGTTTCACTTTCACACCCTAACAAGATCATACATTTACCAGGTCAACCACATGTTGAGTTTCATCAGTTTTCAGGTTATGTAAATGTTGATAACAAAAGCCAAAAAGCACTTTTTTTCTACTTTGTTGAAGCTCAACAAGATGCAGCTTCAAAACCACTTGTTCTTTGGCTTAATGGAGGGCCTGGTTGTTCTTCTCTTGGTGTTGGTGCATTCTCAGAAAATGGTCCTTTTAGGCCTAAAGGAGATGCCTTGGTTAGGAACCAATTCAGCTGGAATACAGAAGCAAATATGTTGTACTTGGAATCACCAATTGGAGTAGGCTTTTCTTATTCAACTGATACTTCATCTTATGAAGGTGTAAATGACAAGATCACAGCCAGGGATAATCTAATCTTCTTGCAAAACTGGTTTGTAAAGTTTCCTAAATACAGAAACAGAAGTTTGTTCATTGTAGGAGAGAGTTATGCCGGTCATTATGTTCCTCAATTGGCTGAGCTTATGCTCCAATTCAACAAAAAGGAGAAGTTGTTTAATTTAAAAGGCATTGCTCTTGGTAATCCAGTTCTGGAATTTGCGACAGATTTTAATTCAAGAGCTGAGTTCTTTTGGTCGCACGGATTGATCTCAGACTTAACATACAAAATGTTCACTTCTGTGTGTAACTATTCAAGATATGTAAGAGAATACTATAACGGCGCCGTTTCTCCGATTTGTTCAAGTGTAATGAGCCAAGTTAGTACAGAAACAAGTAGATTTGTTGACAAGTATGATGTGACACTTGATGTCTGTATATCTTCGGTTTTGTCACAAACCAAAGTCCTTAATCCTCAGCAAGTGACTGAAACAATTGATGTTTGCGTCGAAGACGAAACAGTCAATTATCTTAACAGGAAAGATGTTCAATCAGCTTTACAGGCACGTCTCGTTGGCATAAAAAGATGGTCTCCTTGCAGCAATATTTTGGATTATGACTTGCGGGACTTAGAGATACCGACAATCACGGTTGTAGGCAAGCTAGTCAAGGCAGGAATTCCAGTATTGGTCTACAGTGGTGATCAAGATTCAGTTATCCCATTGACTGGAAGTAGAGCTTTAGTACATCAATTGGCAAAAGAATTGAGAATCAATACAACTGTGCCATACAGGGTGTGGTTTGAAGGGCAGCAGGTGGGTGGTTGGACTCAAGTTTATGGTAACATACTATCATTTGCTACAGTGAGGGGAGCATCACATGAAGCACCATTTTCACAGCCTGAGAGATCACTTGTGCTGTTCAAGTCCTTCTTAGAAGGAAGACCTCTACCAGAAGAATTTTGA 1389 0.3924 MSSQLCGCSIALCVAILLQLCSLGVSLSHPNKIIHLPGQPHVEFHQFSGYVNVDNKSQKALFFYFVEAQQDAASKPLVLWLNGGPGCSSLGVGAFSENGPFRPKGDALVRNQFSWNTEANMLYLESPIGVGFSYSTDTSSYEGVNDKITARDNLIFLQNWFVKFPKYRNRSLFIVGESYAGHYVPQLAELMLQFNKKEKLFNLKGIALGNPVLEFATDFNSRAEFFWSHGLISDLTYKMFTSVCNYSRYVREYYNGAVSPICSSVMSQVSTETSRFVDKYDVTLDVCISSVLSQTKVLNPQQVTETIDVCVEDETVNYLNRKDVQSALQARLVGIKRWSPCSNILDYDLRDLEIPTITVVGKLVKAGIPVLVYSGDQDSVIPLTGSRALVHQLAKELRINTTVPYRVWFEGQQVGGWTQVYGNILSFATVRGASHEAPFSQPERSLVLFKSFLEGRPLPEEF 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00438 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 134 IPR001563 GO:0004185|GO:0006508
Trre13g00438 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 185 IPR001563 GO:0004185|GO:0006508
Trre13g00438 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 425 438 IPR001563 GO:0004185|GO:0006508
Trre13g00438 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 111 123 IPR001563 GO:0004185|GO:0006508
Trre13g00438 462 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 33 442 IPR001563 GO:0004185|GO:0006508
Trre13g00438 462 FunFam Carboxypeptidase 356 455 - -
Trre13g00438 462 Gene3D - 310 346 - -
Trre13g00438 462 FunFam Carboxypeptidase 26 459 - -
Trre13g00438 462 ProSitePatterns Serine carboxypeptidases, histidine active site. 425 442 IPR033124 GO:0004185
Trre13g00438 462 ProSitePatterns Serine carboxypeptidases, serine active site. 174 181 IPR018202 GO:0004185
Trre13g00438 462 Gene3D - 357 455 - -
Trre13g00438 462 Pfam Serine carboxypeptidase 38 455 IPR001563 GO:0004185|GO:0006508
Trre13g00438 462 SUPERFAMILY alpha/beta-Hydrolases 35 459 IPR029058 -
Trre13g00438 462 Gene3D alpha/beta hydrolase 28 289 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00438 Trre-Chr13 3396283 3400142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00438 318 458 Calmodulin-binding Proteins AT2G22960 29.787 2.91e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00438 K16297 - gmx:100805130 818.92