Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00436 ATGGTTGCCGCCAAGAAGACCAAGAAGACTCATGAGAGCATTAACAACAGGCTCGCTCTTGTTATGAAGAGTGGAAAATATACTCTCGGTTATAAAACCGTTCTCAAATCCCTAAGGAGTTCCAAAGGGAAATTGATTATTATTGCTAACAACTGTCCTCCTTTGAGGAAATCTGAAATTGAGTACTATGCTATGTTGGCAAAGGTTGGAGTTCATCATTACAATGGAAACAATGTTGACTTGGGCACTGCCTGTGGAAAATACTACAGAGTTTGCTGCCTCAGCATTATTGATCCAGGTGATTCTGACATCATTAAGTCAATTCCTGGGGAGCAATAA 339 0.4041 MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGEQ 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00436 112 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 13 105 IPR004038 -
Trre13g00436 112 Gene3D - 2 108 IPR029064 -
Trre13g00436 112 Coils Coil 110 112 - -
Trre13g00436 112 ProSitePatterns Ribosomal protein L30e signature 2. 80 100 IPR022991 -
Trre13g00436 112 SUPERFAMILY L30e-like 13 106 IPR029064 -
Trre13g00436 112 Hamap 50S ribosomal protein L30e [rpl30e]. 12 109 IPR000231 GO:0003723|GO:0003735|GO:0022625
Trre13g00436 112 ProSitePatterns Ribosomal protein L30e signature 1. 24 48 IPR022991 -
Trre13g00436 112 FunFam 60S ribosomal protein L30 2 108 - -
Trre13g00436 112 PANTHER RIBOSOMAL PROTEIN L30 1 110 IPR039109 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00436 Trre-Chr13 3384933 3386261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00436 1 112 Cytoplasmic Ribosomal Protein Gene Family AT1G36240 87.500 5.56e-72 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00436 K02908 - gmx:100806260 227.639