Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00435 ATGGTTTCTGCTCTCTCTCAAGTCATTGGAACATCTACCAATAATCATAATCCTCACATGGCACAATCAACATCAACTACCATGGTCAATGAAGAATCTCAAACACCTCAACCTCTTCTAGATCAAGAGACCCCAAAGAAACCACACTACAGAGGAGTGAGAATGAGACCATGGGGGAAATGGGCAGCTGAAATACGTGACCCAAAAAAAGCAGCTAGAGTTTGGTTAGGAACATTTGAAACTGCTGAAGATGCAGCTATTGCATATGACAAAGCAGCACTTAAATTTAAAGGCACAAAAGCTAAACTTAATTTCCCTGAAAGAGTTGTTCAACATCAATCCAACAACAATAGTAATTCTAGTGCCATTCAACAAAGTGATTCTGTTGATCAACAAGTTTTTCCAAACCTTTTTCAATATGCTCAGATTCTTTCTAGTGATGCTGAATTTCCTTATTATGCTTCTCATCTTTTCAATCAACAACAACAACATGGAGATCGTCTTCCGCCAGGCCAGTAG 519 0.3892 MVSALSQVIGTSTNNHNPHMAQSTSTTMVNEESQTPQPLLDQETPKKPHYRGVRMRPWGKWAAEIRDPKKAARVWLGTFETAEDAAIAYDKAALKFKGTKAKLNFPERVVQHQSNNNSNSSAIQQSDSVDQQVFPNLFQYAQILSSDAEFPYYASHLFNQQQQHGDRLPPGQ 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00435 172 Gene3D AP2/ERF domain 49 109 IPR036955 GO:0003700|GO:0006355
Trre13g00435 172 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Trre13g00435 172 MobiDBLite consensus disorder prediction 1 52 - -
Trre13g00435 172 FunFam Ethylene-responsive transcription factor 2 48 107 - -
Trre13g00435 172 CDD AP2 48 107 IPR001471 GO:0003700|GO:0006355
Trre13g00435 172 Pfam AP2 domain 48 98 IPR001471 GO:0003700|GO:0006355
Trre13g00435 172 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Trre13g00435 172 MobiDBLite consensus disorder prediction 1 41 - -
Trre13g00435 172 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Trre13g00435 172 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Trre13g00435 172 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
Trre13g00435 172 PANTHER DNA-BINDING DOMAIN 25 135 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00435 Trre-Chr13 3379051 3381102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00435 1 158 AP2-EREBP Transcription Factor Family AT5G13330 50.282 4.00e-46 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre13g00435 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00435 - - mtr:11443305 279.641