Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00430 ATGGCTTTGGACCAACCTTCGTTACCTTCGAATCCCAATTCCGTTGATGGCGAATCCGGTAACGGAACGCCACCGTCTTCCGCCGTAAATGGCGGCGAAGATGGAAAACCAACGGCGAGGCTACCGCGATGGACGAGGCAAGAGATTTTGGTGCTTATACAAGGTAAGAGTGATGCTGAAAGCCGGTTCAAACCGGGTCGAAACGGTTCGGGATTTGGTTCGAGTGAACCTAAGTGGGCGTTGGTTTCTTCGTACTGTAAGAAACACGGTGTGAACCGTGGACCGATTCAGTGTCGGAAACGGTGGAGTAATCTCGCCGGAGATTATAAGAAGATTAAGGAGTGGGAATCTCAGGTGAGAGATGAAACTGAGTCGTTTTGGTTGATGAGGAATGATTTGAGGAGAGAGAGGAAATTGCCTGGTTATTTTGATCGGGAGGTTTATGATATTCTTGATTCACCTTCTATGGCTGCAGCTGCTGCAGCGGCTGCAACTGCAACTGTTGTTGTTCCGGTGGCGGTTTCGGAACCTGTTGGTGATGAAGAGGTTCATATTTATGATAGTAATAGGAAAGTGAGTGGTGAGGATGGTTTATTCTCTGATTTTGAGAAAGATGAGGTTTTGGTTCCTTCCAAAGATGTTCATGTTCCTTCACCTGTTCCTATCTCAGAGAAGCAGTTTCTACCACTCCTCCGTGCCTGCGAAGGAGAAGGCAATGCTCAAGGTACCAAAAATGAGAAACAGCCAGCTTCAAATCCAGAAATGGGTTCTACATCTCAAGGGGAACGGAAGAGGAAACGTTTTCCAGCCGATGGAGATGAAGAAGAGGAAACTCTACAAAGTCAATTAATTGATGTGTTAGAGAAGAATGGCAAGATGCTAAGTGAACAACTAGAGGCTCAGAACATCAATTTCCAGCTTGATCGTCAGCACCAGAATGACACTGCAAGTAGCATTGTTGCTGTGCTTGATAAGCTTGCAACTGCTCTTGGGAGAATTGCTGATAAATTGTAG 1014 0.4615 MALDQPSLPSNPNSVDGESGNGTPPSSAVNGGEDGKPTARLPRWTRQEILVLIQGKSDAESRFKPGRNGSGFGSSEPKWALVSSYCKKHGVNRGPIQCRKRWSNLAGDYKKIKEWESQVRDETESFWLMRNDLRRERKLPGYFDREVYDILDSPSMAAAAAAAATATVVVPVAVSEPVGDEEVHIYDSNRKVSGEDGLFSDFEKDEVLVPSKDVHVPSPVPISEKQFLPLLRACEGEGNAQGTKNEKQPASNPEMGSTSQGERKRKRFPADGDEEEETLQSQLIDVLEKNGKMLSEQLEAQNINFQLDRQHQNDTASSIVAVLDKLATALGRIADKL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00430 337 CDD GT1 42 113 - -
Trre13g00430 337 MobiDBLite consensus disorder prediction 238 280 - -
Trre13g00430 337 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 9 337 - -
Trre13g00430 337 MobiDBLite consensus disorder prediction 1 43 - -
Trre13g00430 337 ProSiteProfiles Myb-like domain profile. 36 106 IPR001005 -
Trre13g00430 337 MobiDBLite consensus disorder prediction 241 258 - -
Trre13g00430 337 Pfam Myb/SANT-like DNA-binding domain 43 129 IPR044822 -
Trre13g00430 337 MobiDBLite consensus disorder prediction 259 274 - -
Trre13g00430 337 MobiDBLite consensus disorder prediction 1 28 - -
Trre13g00430 337 Gene3D - 44 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00430 Trre-Chr13 3348979 3352419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00430 43 114 Trihelix Transcription Factor Family AT1G33240 34.667 9.26e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre13g00430 Myb_DNA-bind_4 3.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00430 - - tpra:123890648 644.039