Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00429 ATGCAATTCGCTAAGCTTGATGACTCTCCTATGTTCCGCAAACAGATACAAGGCATGGAGGAAAGTGCGGAATCTTTGAGGGAGAGAAGTTTGAAATTTTACAAGGGATGCAGAAAATACACGGAAGGACTTGGAGAGGCATATGATGGAGACATTGCATTTGCAAGTGCCCTAGAAACTTTTGGTGGGGGCCATAATGACCCCATCAGTGTGGCTTTTGGAGGCCCTGTTATGACCAAATTCACTATAGCCTTAAGAGAAATTGGGACATACAAGGAAGTTCTTCGATCACAGGTTGAGCACATGTTAAATGACAGATTGCTCCAGTTTGTCAATATCGATTTGCAAGAGGTCAAGGAAGCACGAAAACGCTTTGACAAAGCCAGCCTTATTTATGACCAGACTCGTGAAAAGTTTCTGTCACTGAGAAAAGGTACAAAATCTGGCGTAGCTACTGCTCTAGAAGAGGAGCTTCATAGTGCAAGAGCTACATTTGAGCAAACTCGGTTTAATCTGGTTACTGCTCTGTCAAATGTTGAAGCAAAGAAGAGATTTGAATTTTTGGAAGCAGTAAGTGGGACCATGGATGCTCATCTTCGTTACTTCAAACAGGGGTATGAACTATTACATCAAATGGAGCCGTATATTAACCAGGTCTTGACTTATGCTCAGCAATCAAGAGAAAGGTCCAATTATGAGCAAGCGGCTCTTAATGAAAGAATGCAAGATTACAAACGGCAGATTGATCGAGAAAGTAGGTTGGCTTCTAACGGTTCTAATGGATCTCCTAATGGAGATGGTATACAAGCCATTGGTAGAAGTTCACATAAGATGATAGAAGCGGTAATGCAAAATGCTGCAAAGGGAAAGGTCCAGACCATTCGACAAGGTTATCTCTCGAAGCGTTCCTCAAACTTAAGGGGGGACTGGAAAAGGAGGTTTTTTGTTCTTGATAGCCGGGGAATGCTTTATTACTACCGTAAACAATGCAGCAAACCATCTGGATCTAGTAGTCAACATTCTGGTCAGAGGAATAGTTCGGAGCTTGGTTCTGGACTTCTAAGTCGATGGCTGTCTTCTCATAATCATCATCATGGTGGAGTACATGATGAGAAATCTGTTGCTCATCACACCGTGAACCTGCTTACATCAACAATTAAAGTTGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGGATCATTTCACCGACAAAGAACTACACTTTGCAGGCAGAGAGTGCACTGGACCAAATGGACTGGATTGAAAAAATCACAGGTGTTATTGCCTCTTTGCTGAGTTCTCAGATTCCTGAAAGGTTGTTATCGGCAAGTCCAATGGGAAGCGGTCATCATAGGTCTACCAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTTGATCACTGTGCTGTTGAAGAAAGTGCAGCTGATAGAAGTTTTGCGTCTGCACATCTGGAGCGCGCCTCCAGAAGTTTGAACCAGCAACGGTCCTGTAATAAAAGCGAGAAACCAATTGATGTGTTGCGAAAAGTTATTGGCAATGATAAATGTGCTGATTGTGGAGCCCCTGAACCAGATTGGGCATCACTAAATCTTGGCGTTCTTGTTTGCATTGAATGTTCTGGTGTTCATCGAAACCTTGGTGTGCACATATCGAAGGTTCGCTCTCTTACATTGGACGTTAAGGTGTGGGAACCTTCTGTGATAACTTTATTTCAGTCTCTTGGGAATACTTTTGCCAACTCTGTCTGGGAGGAACTGTTGCAATCAAGAAGTGCCTTTCAGGTTGATCTTGTCCCTACAGGCTCAAGCAAGTCCGATAAGTCACTGACGGTTTTCATCACCAAACCTAGTCAATATGATTCTCTATCGGTGAAGGAAAAATTCATCCAGGCAAAGTATGCGGAGAAGATTTTTGTTCGCAAGCCAAAGGACAATCAATACCGACTCTTAGTGGCACAGCAGATCTGGGAAGCTGTTCGTGCTAATGACAAGAAAGCCGTATACCGCTACATTGTTAATTCTGATGTTGATGTCAATGCTGTTTATGAGCAAGCATGCAACAACTCTTTAACCCTTGCCAAAGTAATGCTATTACAAGAGCAAGCAAACCATGAAAACGGCCCTAATTTGGCAGGGAACACATTGGACTGGTCCTCTAATGGCTCTATGAATTTGGCGGGCACTAAAGAAGGCCAGCCGATGGTCAATCTCGAAGGGTGCACACTACTTCACATTGCTTGTGAAACTGCAGACATTGGAATGGTAGAGCTCCTCCTGCAATATGGCGCAAATATTAATGCAACCGATTTGAGAGGTCGAACTCCTTTACATCGTTGTATTCTTAAAGGAAGATCTATAATCGCAAGATTACTGCTTTCAAGGGGAGGCGATCCTCGAGCTGTGGACGAGGAAGGAAGAACCCCTATTGAGCTTGCTGCAGAATCAAATGCCGATGACAGAGAAGTCCGTGCTCCAACGACTGATTCTAATGGATGA 2499 0.4338 MQFAKLDDSPMFRKQIQGMEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLQEVKEARKRFDKASLIYDQTREKFLSLRKGTKSGVATALEEELHSARATFEQTRFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQDYKRQIDRESRLASNGSNGSPNGDGIQAIGRSSHKMIEAVMQNAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKPSGSSSQHSGQRNSSELGSGLLSRWLSSHNHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERLLSASPMGSGHHRSTSESSSFESSDFDHCAVEESAADRSFASAHLERASRSLNQQRSCNKSEKPIDVLRKVIGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNTFANSVWEELLQSRSAFQVDLVPTGSSKSDKSLTVFITKPSQYDSLSVKEKFIQAKYAEKIFVRKPKDNQYRLLVAQQIWEAVRANDKKAVYRYIVNSDVDVNAVYEQACNNSLTLAKVMLLQEQANHENGPNLAGNTLDWSSNGSMNLAGTKEGQPMVNLEGCTLLHIACETADIGMVELLLQYGANINATDLRGRTPLHRCILKGRSIIARLLLSRGGDPRAVDEEGRTPIELAAESNADDREVRAPTTDSNG 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00429 832 FunFam ADP-ribosylation factor GTPase-activating protein AGD3 4 251 - -
Trre13g00429 832 MobiDBLite consensus disorder prediction 443 462 - -
Trre13g00429 832 PRINTS HIV Rev interacting protein signature 533 550 IPR001164 GO:0005096
Trre13g00429 832 PRINTS HIV Rev interacting protein signature 556 577 IPR001164 GO:0005096
Trre13g00429 832 PRINTS HIV Rev interacting protein signature 514 533 IPR001164 GO:0005096
Trre13g00429 832 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 484 648 - -
Trre13g00429 832 SMART ANK_2a 739 768 IPR002110 GO:0005515
Trre13g00429 832 SMART ANK_2a 772 801 IPR002110 GO:0005515
Trre13g00429 832 ProSiteProfiles Ankyrin repeat profile. 739 771 IPR002110 GO:0005515
Trre13g00429 832 CDD PH_ACAP 295 434 - -
Trre13g00429 832 ProSiteProfiles PH domain profile. 292 430 IPR001849 -
Trre13g00429 832 ProSiteProfiles Ankyrin repeat region circular profile. 772 804 - -
Trre13g00429 832 SMART PH_update 293 432 IPR001849 -
Trre13g00429 832 SMART arf_gap_3 502 647 IPR001164 GO:0005096
Trre13g00429 832 CDD ArfGap 505 634 - -
Trre13g00429 832 PANTHER CENTAURIN/ARF 3 825 IPR045258 GO:0005096
Trre13g00429 832 CDD BAR_SFC_plant 14 215 IPR035670 -
Trre13g00429 832 SUPERFAMILY Ankyrin repeat 666 818 IPR036770 -
Trre13g00429 832 Gene3D - 647 821 IPR036770 -
Trre13g00429 832 MobiDBLite consensus disorder prediction 798 832 - -
Trre13g00429 832 SUPERFAMILY ArfGap/RecO-like zinc finger 502 642 IPR037278 -
Trre13g00429 832 Pfam Putative GTPase activating protein for Arf 505 642 IPR001164 GO:0005096
Trre13g00429 832 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Trre13g00429 832 SUPERFAMILY PH domain-like 293 447 - -
Trre13g00429 832 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Trre13g00429 832 Pfam BAR domain of APPL family 6 232 IPR004148 GO:0005515|GO:0005737
Trre13g00429 832 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Trre13g00429 832 ProSiteProfiles Ankyrin repeat profile. 772 804 IPR002110 GO:0005515
Trre13g00429 832 Gene3D - 285 440 IPR011993 -
Trre13g00429 832 Coils Coil 227 254 - -
Trre13g00429 832 Pfam Ankyrin repeats (many copies) 742 793 IPR002110 GO:0005515
Trre13g00429 832 ProSiteProfiles Ankyrin repeat region circular profile. 739 770 - -
Trre13g00429 832 MobiDBLite consensus disorder prediction 798 826 - -
Trre13g00429 832 Pfam PH domain 294 429 IPR001849 -
Trre13g00429 832 Gene3D Arf GTPase activating protein 482 646 IPR038508 -
Trre13g00429 832 ProSiteProfiles ARF GTPase-activating proteins domain profile. 502 647 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00429 Trre-Chr13 3336723 3344222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00429 514 641 C2H2 Transcription Factor Family AT4G21160 41.860 6.06e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00429 K12489 - gmx:100789134 1445.64