Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00428 ATGTTTAAGAAAACACAAACCTTTTTTTATCTTGTAAAGGAATTGTTGGTATTTCGGCCACTTTTTCTTCTTCTGTTCTTGTTCAGTTTGCATCATAACACTGTGCAATGTGAAGGAAGGTTGAGTAAGAACATATCTTCTGAGACTTCATCACAATCAGATTATAAAGATAATCCTAGGAAGGTTATTGTTAGCATAGTTCTAGGAGCAGTGACTGGATTAATTGGTTCTGTTGTCTTTGCATTTGTGATTCGTTGTATTGTTCGGTATCTAAACCGAACACCGATCCTCAAAGGACCCGTCATATTCTCCCCAAAAATTGCGTCAAAGACACTCCAAATAGCTTTGTCAAAAGAAAATCATTTGCTTGGTTCAAGTCCAAATGGGAAATACTACAAAACTGTTCTTGAAAATGGTCTCACAATTGCAGTCAAAAGGCTAACACCCTTTGAGAGCAATTCACCAGAGAGTAGGAGAAAATCAGTGAAGAGGCAAATACAGATGGAGCTAGAGCTTCTTGCTAGCTTAAGACATAGGAATTTGATGAGTTTAAGAGCTTATGTTCGCGAAAATGATGGATTCTCGCTGGTTTATGATTATGTATCAACTGGTAGTCTTGCAGATGTGATGAATAGAGTGAGGGAAAATGAGTTGCAAATTGGTTGGGAAGTTAGGTTAAGGATTGCTGTTGGTGTGGTGAAGGGTCTTCAATATCTTCATTTCACTTGTGTGCCTCAGATTTTGCATTTCAATTTGAAGCCTACAAATGTGATGTTGGATGCTGAGTTTGAACCTAGATTGGCAGATTATGGATTGGCTAAACTTCTACCAAACTTAGATAGAGGGACATCACTCAACACCCCTCCTGAATGTTTGCATAATCGCAGCAGGTACACAGAAAAGAGTGACATATTCGGTTTCGGCATGATACTAGGTGTTTTATTAACTGGTAAGGATGCTACAGATCCATTCTTTGGCGAAGCAGGCAGAGGAGGAAGTTTGGGATGTTGGCTAAGACACTTGAAGCAAGCCGGCGAGGAAAGAGAAGCTCTAGATAAGAGTATTTTGGGGGAACAAGGTGAAGAAGATGAGATGCTAATGGCTGTTGGGATTGCTGCTGCTTGCTTATCTGATATGCCTGCAGATAGACCTTCCAGTGACGAGCTTGTTCACATGCTAACACAACTCAATAGTTTTTGA 1200 0.3992 MFKKTQTFFYLVKELLVFRPLFLLLFLFSLHHNTVQCEGRLSKNISSETSSQSDYKDNPRKVIVSIVLGAVTGLIGSVVFAFVIRCIVRYLNRTPILKGPVIFSPKIASKTLQIALSKENHLLGSSPNGKYYKTVLENGLTIAVKRLTPFESNSPESRRKSVKRQIQMELELLASLRHRNLMSLRAYVRENDGFSLVYDYVSTGSLADVMNRVRENELQIGWEVRLRIAVGVVKGLQYLHFTCVPQILHFNLKPTNVMLDAEFEPRLADYGLAKLLPNLDRGTSLNTPPECLHNRSRYTEKSDIFGFGMILGVLLTGKDATDPFFGEAGRGGSLGCWLRHLKQAGEEREALDKSILGEQGEEDEMLMAVGIAAACLSDMPADRPSSDELVHMLTQLNSF 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00428 399 Gene3D Phosphorylase Kinase; domain 1 104 200 - -
Trre13g00428 399 Gene3D Transferase(Phosphotransferase) domain 1 201 398 - -
Trre13g00428 399 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 109 200 - -
Trre13g00428 399 ProSiteProfiles Protein kinase domain profile. 117 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00428 399 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 33 395 - -
Trre13g00428 399 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 201 398 - -
Trre13g00428 399 SUPERFAMILY Protein kinase-like (PK-like) 120 394 IPR011009 -
Trre13g00428 399 Pfam Protein kinase domain 119 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00428 Trre-Chr13 3328523 3330380 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00428 63 396 Receptor kinase-like Gene Family AT2G31880 33.803 9.03e-57 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Trre13g00428 Pkinase 5.1e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00428 - - gmx:102664273 654.055