Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00427 ATGTTTAAGAAAACACAAACCTTTTTTTATCTTGTAAAGGAATTGTTGGTATTTCGGCCACTTTTTCTTCTTCTGTTCTTGTTCAGTTTGCATCATAACACTGTGCAATGTGAAGGAAGGTTGAGTAAGAACATATCTTCTGAGACTTCATCACAATCAGATTATAAAGATAATCCTAGGAAGGTTATTGTTAGCATAGTTCTAGGAGCAGTGACTGGATTAATTGGTTCTGTTGTCTTTGCATTTGTGATTCGTTGTATTGTTCGGTATCTAAACCGAACACCGATCCTCAAAGGACCCGTCATATTCTCCCCAAAAATTGCGTCAAAGACACTCCAAATAGCTTTGTCAAAAGAAAATCATTTGCTTGGTTCAAGTCCAAATGGGAAATACTACAAAACTGTTCTTGAAAATGGTCTCACAATTGCAGTCAAAAGGCTAACACCCTTTGAGAGCAATTCACCAGAGAGTAGGAGAAAATCAGTGAAGAGGCAAATACAGATGGAGCTAGAGCTTCTTGCTAGCTTAAGACATAGGAATTTGATGAGTTTAAGAGCTTATGTTCGCGAAAATGATGGATTCTCGCTGGTTTATGATTATGTATCAACTGGTAGTCTTGCAGATGTGATGAATAGAGTGAGGGAAAATGAGTTGCAAATTGGTTGGGAAGTTAGGTTAAGGATTGCTGTTGGTGTGGTGAAGGGTCTTCAATATCTTCATTTCACTTGTGTGCCTCAGATTTTGCATTTCAATTTGAAGCCTACAAATGTGATGTTGGATGCTGAGTTTGAACCTAGATTGGCAGATTATGGATTGGCTAAACTTCTACCAAACTTAGATAGAGGGACATCACTCAACACCCCTCCTGAATGTTTGCATAATCGCAGGTACACAGAAAAGAGTGACATATTCGGTTTCGGCATGATACTAGGTGTTTTATTAACTGGTAAGGATGCTACAGATCCATTCTTTGGCGAAGCAGGCAGAGGAGGAAGTTTGGGATGTTGGCTAAGACACTTGAAGCAAGCCGGCGAGGAAAGAGAAGCTCTAGATAAGAGTATTTTGGGGGAACAAGGTGAAGAAGATGAGATGCTAATGGCTGTTGGGATTGCTGCTGCTTGCTTATCTGATATGCCTGCAGATAGACCTTCCAGTGACGAGCTTGTTCACATGCTAACACAACTCAATAGTTTTTGA 1197 0.3985 MFKKTQTFFYLVKELLVFRPLFLLLFLFSLHHNTVQCEGRLSKNISSETSSQSDYKDNPRKVIVSIVLGAVTGLIGSVVFAFVIRCIVRYLNRTPILKGPVIFSPKIASKTLQIALSKENHLLGSSPNGKYYKTVLENGLTIAVKRLTPFESNSPESRRKSVKRQIQMELELLASLRHRNLMSLRAYVRENDGFSLVYDYVSTGSLADVMNRVRENELQIGWEVRLRIAVGVVKGLQYLHFTCVPQILHFNLKPTNVMLDAEFEPRLADYGLAKLLPNLDRGTSLNTPPECLHNRRYTEKSDIFGFGMILGVLLTGKDATDPFFGEAGRGGSLGCWLRHLKQAGEEREALDKSILGEQGEEDEMLMAVGIAAACLSDMPADRPSSDELVHMLTQLNSF 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00427 398 Gene3D Phosphorylase Kinase; domain 1 104 200 - -
Trre13g00427 398 ProSiteProfiles Protein kinase domain profile. 117 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00427 398 Gene3D Transferase(Phosphotransferase) domain 1 201 397 - -
Trre13g00427 398 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 201 397 - -
Trre13g00427 398 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 33 394 - -
Trre13g00427 398 SUPERFAMILY Protein kinase-like (PK-like) 120 393 IPR011009 -
Trre13g00427 398 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 109 200 - -
Trre13g00427 398 Pfam Protein kinase domain 119 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00427 Trre-Chr13 3328523 3330380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00427 63 395 Receptor kinase-like Gene Family AT2G31880 33.898 4.65e-58 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Trre13g00427 Pkinase 1.2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00427 - - gmx:102664273 648.662