Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00423 ATGGGAAAGAAAAAGACAGATGATGCAGGTCCATCTTCAAAACTGAAGGCAGGTAGCAAAGACGGTTCCAAAAAGGAAAAATTGTCAGTCTCTGCCATGTTGGCAGGTATGGATGACAAAGCTGATAAGCCTAAAAAAGGATCTTCTACAAATAAGCCAAAGCCAAAATCTGCTCCGAAAGCTTCTGCGTACACTGATGATATTGATCTTCCTCCCTCTGATGATGATGAGTCGGAAGAGGAGCTAGAGGAAAAGCATAGACCTGATGTGAAGCCACTTGAGGTGTCTATTGCTGAAAAAGAGTTGAAAAAGCGTGAAAAGAAAGATATTTTAGCTGCCCATGTGGCTGAACAGGCAAAGAAAGAAGCTCTTAGGGATGATCGCGATGCTTTCACTGTTGTCATTGGAAGTCGGGCTTCGGTGCTTGATGGAGACGATGGTGCTGATGCTAATGTTAAAGATATAACGATAGAAAATTTTTCTGTGTCTGCTCGAGGTAAAGAACTTCTGAAGAATGCATCAGTGAAGATATCTCATGGCAAGCGGTATGGTTTGGTTGGGCCGAATGGAATGGGAAAGTCAACACTTTTGAAGCTTCTTGCTTGGAGGAAGATACCAGTACCTAAGAATATTGACGTCCTTCTGGTTGAGCAGGAGGTAGTTGGTGATGATAAAACAGCACTCGAAGCCGTTGTTTCGGCTAATATTGAACTAGTTAAAGTTCGACAAGAAGTTGCTGATCTACAGAATGTAGCTTCTGGTGAAGGTGTGGAAAAAGATGATACTAATGAGGAAGAGGATGCAGGAGAAAAGCTAGCAGAGCTGTATGAACAATTACAACTGATGGGGTCTGATGCTGCTGAATCTCAAGCGTCAAAAATTTTAGCTGGTCTGGGTTTTACAAAGGATATGCAGGTCCGCCCTACCAAATCCTTTAGTGGTGGCTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTTGTTCAGCCCACTCTATTATTGCTCGATGAACCCACTAATCATCTTGACCTGAGGGCTGTTCTCTGGTTGGAAGAATACTTGTGTCGTTGGAAGAAAACTTTGGTCGTTGTATCACACGATAGAGATTTTCTCAATACAGTATGCTCTGAGATTATTCACCTGCATGATTTGAAACTTCATTTCTATCGTGGAAATTTTGATGCTTTTGAGAGCGGGTATGAACAGCGTCGTAGAGAGGTGAATAAGAAGTATGAGACTTATGACAAGCAATTGAAAGCAGCTAGAAGGACTGGAAACAAAGCTCAACAAGATAAGGTGAAGGATCGAGCCAAGTTTGCAGCCAAGGAAGCATCAAAAAGAAAAAGTAAGGGTAAGGTTGATGAGGATGAGGATGAGGCCCAAGTAGAGGTACCGCACAAGTGGAGGGACTACAGCGTGGAGTTCCACTTTCCTGAACCTACTGAGCTCACACCACCACTTCTGCAGCTTATTGAAGTGAGCTTCAGCTACCCAAACCGAGAGGATTTCAGACTCTCAAATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATTGTTGGGCCGAATGGAGCTGGAAAATCTACACTGCTAAATCTTCTAGCTGGTGATTTGGTTGAAAGTGAAGGTGAAATTCGAAGGAGTCAGAAGTTGAGGATAGGGAGATACTCCCAACACTTTGTGGACCTGCTAACAATGGACGAAACACCTGTTCAGTACCTTCTTCGTCTCCATCCAGACCAGGAGGGACTTAGCAAGCAGGAGGCTGTCCGTGCAAAACTTGGTAAATTTGGACTACCTAGTCATAACCATCTTACCCCCATTGTCAAACTATCAGGAGGGCAGAAAGCTCGAGTGGTCTTCACGTCGATATCCATGTCAAAACCTCACATTTTATTGTTAGATGAACCCACCAATCATCTGGATATGCAAAGTATTGATGCATTGGCTAATGCGCTTGATGAATTCACTGGTGGAGTTGTTCTTGTTAGTCATGATTCTAGATTGATATCTCGTGTCTGTGATGATGAAGAAAGGAGTCAACTATGGATTGTTGAGGACGGCACTGTCAGAAATTTCCCTGGAACATTTGACGATTACAAGGATGATTTGCTGAAAGAGATTAAAGCTGAAGTTGATGATTGA 2148 0.4316 MGKKKTDDAGPSSKLKAGSKDGSKKEKLSVSAMLAGMDDKADKPKKGSSTNKPKPKSAPKASAYTDDIDLPPSDDDESEEELEEKHRPDVKPLEVSIAEKELKKREKKDILAAHVAEQAKKEALRDDRDAFTVVIGSRASVLDGDDGADANVKDITIENFSVSARGKELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANIELVKVRQEVADLQNVASGEGVEKDDTNEEEDAGEKLAELYEQLQLMGSDAAESQASKILAGLGFTKDMQVRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCSEIIHLHDLKLHFYRGNFDAFESGYEQRRREVNKKYETYDKQLKAARRTGNKAQQDKVKDRAKFAAKEASKRKSKGKVDEDEDEAQVEVPHKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVESEGEIRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIVKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALANALDEFTGGVVLVSHDSRLISRVCDDEERSQLWIVEDGTVRNFPGTFDDYKDDLLKEIKAEVDD 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00423 715 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 488 713 IPR003439 GO:0005524
Trre13g00423 715 Gene3D - 450 714 IPR027417 -
Trre13g00423 715 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 125 709 - -
Trre13g00423 715 Gene3D - 152 436 IPR027417 -
Trre13g00423 715 ProSitePatterns ABC transporters family signature. 312 326 IPR017871 GO:0005524|GO:0016887
Trre13g00423 715 FunFam ABC transporter F family member 4 451 715 - -
Trre13g00423 715 SMART AAA_5 514 690 IPR003593 GO:0016887
Trre13g00423 715 SMART AAA_5 179 384 IPR003593 GO:0016887
Trre13g00423 715 Coils Coil 231 251 - -
Trre13g00423 715 FunFam ABC transporter F family member 4 153 436 - -
Trre13g00423 715 MobiDBLite consensus disorder prediction 1 90 - -
Trre13g00423 715 CDD ABCF_EF-3 155 385 - -
Trre13g00423 715 Pfam ABC transporter 170 340 IPR003439 GO:0005524
Trre13g00423 715 CDD ABCF_EF-3 488 690 - -
Trre13g00423 715 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 155 408 IPR003439 GO:0005524
Trre13g00423 715 MobiDBLite consensus disorder prediction 421 461 - -
Trre13g00423 715 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 467 677 IPR027417 -
Trre13g00423 715 Pfam ABC transporter 505 640 IPR003439 GO:0005524
Trre13g00423 715 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 386 IPR027417 -
Trre13g00423 715 Coils Coil 404 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00423 Trre-Chr13 3309992 3312139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00423 487 666 Calmodulin-binding Proteins AT2G36910 29.952 5.79e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00423 K06184 - gmx:100806865 1167.91