Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00420 ATGTTTCCTTCTACTTATTGCTCTTTAGGTCCTTACCCTTGTTATAATCCTAATTCTTCTTCTTCATCACATTCATACCCTCCTTTTACTTTTCTTACCCCTGATCAAAATGTTTCTTCAAACAACACCACCAACAACAATAACACCAACAACAACAACATCAACACTTTTCTTCATGATCCAACTATTTCTATTCCCTACACACAAACAACTCATCATCATCATGTTCCAATTAATCCTGAAACATTAACAAATTGGGCTGTTGCTGACTACGCCGCAATGTTGAAACAAGATCTAAGTGGTTCTTCTCATTATGGTAATATCTCAAATATGCTTACAAAGAAACCGGTTAAGAAGCCGGTGAAGAAAGACCGGCACAGCAAGATTCATACATCTCAAGGTTTGAGAGACAGAAGGGTAAGACTTTCAATTGAGATCGCGCGAAAATTCTTCGATCTTCAAGACATGTTAGGGTTTGACAAAGCTAGTAACACACTTGAATGGCTCTTCAACAAATCAAAAGAGGCAATTGAAGAGTTAACAAAAAGCAAGAACAACATAGTTTCCGGTGATGATGATGACGATGATCGTAGCTTCTACTCTTCGTCTTCTGATGAAGGAGACGAAGAAGTTAGAAAGATGAAAAGGGCACAAAAAGAATCTTCAAAGATGAAGGAATCAAGGGACAAATCAAGAGCAAGAGCAAGGGAAAGAACAAGTGAAATGATGATGCAAGATTTGAAAGAAAAATACCCTGAAAATGTTCAAAATCAACAAATCCTTCATCAATTGATGCCTAATGATGAGGAAAGTTCAAAATCACTTCAAAGAGATGATATCTTTAACTTTATTGAGGAATCAATTGTGATTAAGAGAAAGTTGAAGAAATCTTCTCATCATCAACAACAACAAAACAATTTGATCCCTAAGGAAACAAGTTTTGATCACAACAGTGACTGTCATGACTCTCCAATGTTATCACCAAATTGGGATGCAAATAATAACAATTCTGCTTCTGGAAGATCCAACTTTTCTGCAATATCAAGAATGAATCTATCATCAGGGCTTCAAATCTTTGGAAAATCATGGGAGGATTGCAATACAAGTCCAAATCGATATTAG 1122 0.3601 MFPSTYCSLGPYPCYNPNSSSSSHSYPPFTFLTPDQNVSSNNTTNNNNTNNNNINTFLHDPTISIPYTQTTHHHHVPINPETLTNWAVADYAAMLKQDLSGSSHYGNISNMLTKKPVKKPVKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKEAIEELTKSKNNIVSGDDDDDDRSFYSSSSDEGDEEVRKMKRAQKESSKMKESRDKSRARARERTSEMMMQDLKEKYPENVQNQQILHQLMPNDEESSKSLQRDDIFNFIEESIVIKRKLKKSSHHQQQQNNLIPKETSFDHNSDCHDSPMLSPNWDANNNNSASGRSNFSAISRMNLSSGLQIFGKSWEDCNTSPNRY 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00420 373 ProSiteProfiles TCP domain profile. 122 180 IPR017887 -
Trre13g00420 373 MobiDBLite consensus disorder prediction 295 334 - -
Trre13g00420 373 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 53 337 IPR005333 GO:0003700
Trre13g00420 373 MobiDBLite consensus disorder prediction 300 334 - -
Trre13g00420 373 Coils Coil 214 234 - -
Trre13g00420 373 ProSiteProfiles R domain profile. 225 242 IPR017888 -
Trre13g00420 373 MobiDBLite consensus disorder prediction 186 242 - -
Trre13g00420 373 Pfam TCP family transcription factor 121 245 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00420 Trre-Chr13 3253508 3254733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00420 59 246 TCP Transcription Factor Family AT1G67260 40.553 5.35e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre13g00420 TCP 4.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00420 - - cam:101489716 435.261