Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00410 ATGGGTAGAGGAAAAAATGACTGCTGGTCTCACGTTACAACAGTAGAAGATGGTAAGAAATGGATATGCAACTATTGTAAGGAAGAGTTTAGTGGAGGAGCCTCAAGAATCGTAGCACACCTGGGGTTAGGTGGCAAAGGAGGTGGCATTAGGCGATGCTCCAATTATCATGCTAATGATGGAATTCACAATATGACATCCACTTCAAGTAATTCACCAGAAGTTGTGATAAATAGAGTTTATTCAACCCAAGATCAAGGTGTGAATGATAGAAACATGGAAAAGCAACCTCTCACTTTGTCACCTGAATATGTCGGGGAAGAATTAGATGAAAATATCAAGAAAGTGTTGAAACTTGTAGATGATGACAAAGTGTTTGTGATTGGGATATATGGAATGGGAGGAGTGGGAAAAACTTTACTTGCAACTCTCGTTGAAAATGAAGTTAAAAGGAAATCAACTTTCAAAGATGTGTTTTGGGTCACTGTTTCCAATAAGTTCAGCATCTCTAAACTGCAAGATGATATCGCAAAAAGAATAGGTGTAAAGCTTGATGAAGATGATGAGAGAATAAGATCAAACAACTTGTCTTTGGCACTGGAGACAAAGGAAAAATCTATTATTGTTTTGGATGATGTTTGGAATTACATTGATTTGCAAAAAGTGGGAATTCCTCTCAAAGTGAATGGCATTAAAGTGATTCTCACAACTCGTTTGAAACATGTGTGTCACCAGATGGATTGTTTGCCAAATCATATGATACAAATCATACCTCTCAACCACACTCTTTATCGTGGACATGAAGATTGGCGTTTATTTGACATAAAACTTGGACATAATGGAACACCTATCACACTCTCCCCTGAAATAGAAAATATCGCAAAAGGTATTGTACAGAGGTGTGGTGGTTTACCACTTGGAATTAGTGTGATAGCTAGAACCATGAAGGGGATTGATGACATTCATCAATGGAAACATGCATTGAATAAACTTAAAAAATTGGAAATGGGACAAGAGTTGGAAGAAGAAGTCTTGAAGGTATTAAAACGAAGCTATGATAATTTGATGGATAAGGACTTGCAAAACTGTTTCCTGTATTGTGCATTATTCTGGACGGGGAACAAAGATGAGTTGATCATGAAGCTAGTTGACAATGGACAAATAAATAAGAATATATGTTTGGAAGAAATATTTGATGAAGGGAATACCATATTGAATAAGCTTGAAGCACATTCTTTGATCAAAATTGGTGAGGATTATGTATTCATACATCCCTTGGTGAGAAGTATGGCATGTTATATCATGAAAGAGAAGCAGAGGAATATCATAGTGAATGATGGATCCACCATGATACCTCTCTCACATGGATGGGCAACTGACTTAGAGTTGGTTTGTATTCGGTAG 1404 0.3697 MGRGKNDCWSHVTTVEDGKKWICNYCKEEFSGGASRIVAHLGLGGKGGGIRRCSNYHANDGIHNMTSTSSNSPEVVINRVYSTQDQGVNDRNMEKQPLTLSPEYVGEELDENIKKVLKLVDDDKVFVIGIYGMGGVGKTLLATLVENEVKRKSTFKDVFWVTVSNKFSISKLQDDIAKRIGVKLDEDDERIRSNNLSLALETKEKSIIVLDDVWNYIDLQKVGIPLKVNGIKVILTTRLKHVCHQMDCLPNHMIQIIPLNHTLYRGHEDWRLFDIKLGHNGTPITLSPEIENIAKGIVQRCGGLPLGISVIARTMKGIDDIHQWKHALNKLKKLEMGQELEEEVLKVLKRSYDNLMDKDLQNCFLYCALFWTGNKDELIMKLVDNGQINKNICLEEIFDEGNTILNKLEAHSLIKIGEDYVFIHPLVRSMACYIMKEKQRNIIVNDGSTMIPLSHGWATDLELVCIR 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00410 467 ProSiteProfiles Zinc finger BED-type profile. 3 60 IPR003656 GO:0003677
Trre13g00410 467 Pfam BED zinc finger 8 52 IPR003656 GO:0003677
Trre13g00410 467 Pfam NB-ARC domain 111 354 IPR002182 GO:0043531
Trre13g00410 467 PRINTS Disease resistance protein signature 301 315 - -
Trre13g00410 467 PRINTS Disease resistance protein signature 127 142 - -
Trre13g00410 467 PRINTS Disease resistance protein signature 200 214 - -
Trre13g00410 467 Gene3D - 265 356 IPR042197 -
Trre13g00410 467 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 99 439 - -
Trre13g00410 467 FunFam Probable disease resistance protein At1g61300 87 249 - -
Trre13g00410 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 367 IPR027417 -
Trre13g00410 467 Gene3D - 85 253 IPR027417 -
Trre13g00410 467 SMART AAA_5 124 269 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00410 Trre-Chr13 3206292 3207844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00410 128 440 WRKY Transcription Factor Family AT5G45050 21.646 5.91e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00410 - - mtr:120576832 517.694