LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre13g00408	ATGGCTTCAATCACTCTTTCTCCTAATGCTTCCCCTGTTGCATTGCCTCCATCATCTGGTGCTGCTGTTTTATCACCACCACCATCACCTAATACTTCTCAATCCAATCAATCATCTACTTCGCCGCAGGCCCTGCCTGTAACTACTCCTCCTTCTCCGTCTCCTCCGCAGGCTGTGCCTGTAACTTCTCCACCTTCTCCTTCGCTTTCTCCTCCACCGTCGAATGCACCACCGCCAACTTCACCACCAGCGCCTCCTGCATCTCCACCTCCTGGACCAGTGGTAACTGCCCCTCCTCCAGCTAAAACTTCACCTTCAGTTCCAAATTTGTCTCCACCACCTCCATCAGCTGGTTCCCCTCCTCCTCAATCATCAAATCCACCTCCTTCTCAATCAATTTCGCCGTCTCCTCCTCCTCCTCCTCCAGCCAATGTACCTAAGCCCCCATCTTCCAATCCTCCTCCTGCACCACAAGCAAAGCCGCCAAAAAGTAACACTCCTTCGCCTCCTGCACCACAAGCAAAGCCACCAAAAAGTAACACTCCTTCACCACCTGCACCACAAGCCAAGCCATCAAAAAGTAACACTCCTTCACCTCATGCACCACAAGCCAAGCCACCAAAAAGTAACACTCCTTCACCTCCTGCACCTCCTCCATCTGTTTCTCAATCTCCTCCTTCCCCTCCCACCGGTGATCCTCCTTCCGCTTCCACTGCTGTTCCACCTCCGTCTACATTGCCATCAACTCCTCCTTCAGTCCCTTCAGGATCTGCAGCACCTCCAGCAACCTCTTTGCTTCGTCCTCCTACGAACGAAACAGTACCTGCTGGTGGTCCAAAAGTGTCAATGCCATCTATTCCGACTGAGAAACCAACTGCAAGACCGACTGTTGATGGATCTGGTAATATTGCCACAAACAACGCACCTTCACATTCAGGAGGGTTGAAGACCGGAGGAGCTGTTGCTATTGGCGTCGTAGCTAGTTTAATTGTTCTCAGCCTTCTTGGCATGGCTGTGTGGTTTGTGCAGAAAAAGAAGAAGGGAAAAGGACCAAGAGATGATTCTGCTGCACCTTCCCCATTTACCTCGTCTCACAATTCAGGTACATTGTTCTTGAAGCCACAGTCTCAAGCTAATTTTGTAGGGAGTGGCAGCAGTAATGAATATGTGTATTCACCATCAGAGCCAGGTGGAGTAAATAGTTCAAGATCATGGTTCACATATGAAGAACTTATCCAAGCTACAAATGGGTTTTCCGAGCAGAATAAATTGGGTGAGGGTGGATTCGGTTGTGTCTACAAAGGTTTGCTTACAGATGGAAGAGAAGTTGCTGTGAAACAGCTTAAAATTGGTGGTGGGCAAGGGGAACGTGAGTTCAGAGCAGAAGTTGAGACTATTAGTCGAGTACATCATCGTCATCTGGTTTCTTTGGTTGGTTACTGTATATCTGAGCATCAAAGATTGCTTGTCTATGACTATGTTCCCAACAATACTCTTCATTACCATCTACATGATGATAAAGCACCTGTTCTGGACTGGTCTATCAGAGTTAAGGTTGCTGCTGGTGCAGCTCGTGGAATAGCTTACCTACATGAAGACTGCCATCCACGCATTATTCATCGAGATATTAAATCATCCAACATCCTTCTCGATCACAACTTTGAAGCTCTTGTTTCAGATTTTGGGCTTGCGAAATTAGCGTTGGATTCAAACACACATGTAACTACACGTGTAATGGGAACCTTTGGGTACATGGCACCAGAATATGCGACAAGTGGGAAATTAACTGATAAGTCTGATGTATATTCCTTCGGTGTTGTGCTTTTGGAGCTAATTACAGGTCGTAAGCCCGTAGATGACTCTCAGCCAATTGGTGATGAGAGCCTTGTTGAATGGGCTCGGCCTTTGTTGATTGAAGCCCTCGAGAAAGAGGACTTTGAAATTTTGGCGGATCCAAGACTAGGAAAGAACTACAATAGAAATGAAATGTTTAGGATGATTGAGGCTGCCGCAGCTTGCGTGCGTCACTCCTCGGTTAAGAGGCCACGGATGAATCAGGTTATGAGAGCTTTCGATTCCATGGACGAGTCTGCAGATCTGAATAATGGAATGAAACCGGGACAGAGTTCAGTGTTCGATTCTGCACAGCAATCTGCACAGATAAGAATGTTTAGGAGAATGGCTTTTGGAAGCCAAGATAGTTCCAGCTTCTATAATGAGTCTCAAAGTAGCTATAGGAGTAGAGACCAGGACTCTACAACTATGTTCCCCCAAAATCAATCGCGGCCTTGGAACGTTCGAGATGACTCTTTATAG	2316	0.4702	MASITLSPNASPVALPPSSGAAVLSPPPSPNTSQSNQSSTSPQALPVTTPPSPSPPQAVPVTSPPSPSLSPPPSNAPPPTSPPAPPASPPPGPVVTAPPPAKTSPSVPNLSPPPPSAGSPPPQSSNPPPSQSISPSPPPPPPANVPKPPSSNPPPAPQAKPPKSNTPSPPAPQAKPPKSNTPSPPAPQAKPSKSNTPSPHAPQAKPPKSNTPSPPAPPPSVSQSPPSPPTGDPPSASTAVPPPSTLPSTPPSVPSGSAAPPATSLLRPPTNETVPAGGPKVSMPSIPTEKPTARPTVDGSGNIATNNAPSHSGGLKTGGAVAIGVVASLIVLSLLGMAVWFVQKKKKGKGPRDDSAAPSPFTSSHNSGTLFLKPQSQANFVGSGSSNEYVYSPSEPGGVNSSRSWFTYEELIQATNGFSEQNKLGEGGFGCVYKGLLTDGREVAVKQLKIGGGQGEREFRAEVETISRVHHRHLVSLVGYCISEHQRLLVYDYVPNNTLHYHLHDDKAPVLDWSIRVKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDHNFEALVSDFGLAKLALDSNTHVTTRVMGTFGYMAPEYATSGKLTDKSDVYSFGVVLLELITGRKPVDDSQPIGDESLVEWARPLLIEALEKEDFEILADPRLGKNYNRNEMFRMIEAAAACVRHSSVKRPRMNQVMRAFDSMDESADLNNGMKPGQSSVFDSAQQSAQIRMFRRMAFGSQDSSSFYNESQSSYRSRDQDSTTMFPQNQSRPWNVRDDSL	771

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre13g00408	771	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	538	550	IPR008271	GO:0004672\|GO:0006468
	Trre13g00408	771	MobiDBLite	consensus disorder prediction	733	771	-	-
	Trre13g00408	771	MobiDBLite	consensus disorder prediction	298	313	-	-
	Trre13g00408	771	Gene3D	Transferase(Phosphotransferase) domain 1	494	715	-	-
	Trre13g00408	771	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	329	739	IPR047117	-
	Trre13g00408	771	ProSiteProfiles	Protein kinase domain profile.	418	694	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre13g00408	771	MobiDBLite	consensus disorder prediction	346	368	-	-
	Trre13g00408	771	MobiDBLite	consensus disorder prediction	200	257	-	-
	Trre13g00408	771	FunFam	proline-rich receptor-like protein kinase PERK8	494	706	-	-
	Trre13g00408	771	Pfam	Protein tyrosine and serine/threonine kinase	421	689	IPR001245	GO:0004672\|GO:0006468
	Trre13g00408	771	Gene3D	Phosphorylase Kinase; domain 1	390	493	-	-
	Trre13g00408	771	ProSitePatterns	Protein kinases ATP-binding region signature.	424	446	IPR017441	GO:0005524
	Trre13g00408	771	FunFam	Proline-rich receptor-like protein kinase PERK8	390	493	-	-
	Trre13g00408	771	MobiDBLite	consensus disorder prediction	46	192	-	-
	Trre13g00408	771	SUPERFAMILY	Protein kinase-like (PK-like)	396	690	IPR011009	-
	Trre13g00408	771	CDD	STKc_IRAK	424	689	-	-
	Trre13g00408	771	MobiDBLite	consensus disorder prediction	1	313	-	-
	Trre13g00408	771	SMART	serkin_6	418	654	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre13g00408	771	MobiDBLite	consensus disorder prediction	25	45	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre13g00408	Trre-Chr13	3184695	3189681	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre13g00408	291	687	Trihelix Transcription Factor Family	AT1G68690	64.824	0.0	546

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Trre13g00408		PK_Tyr_Ser-Thr	9.2e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre13g00408	-		-	gmx:100784873	843.958