Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00388 ATGTTGGAGCACGAATTCCTTACCACTACCTCGGCCACCGGCACCGTTAGGTCTGCGGTCACGTGGCCGCGTACATGTGACACGTGCCGCTCTGCTCCATGCGCGGTATTCTGCCGCGCAGACTCAGCGTATTTATGCGCTGGGTGTGATGCACGGATTCACGCTGCAAACCGAGTAGCTTCGAGGCACGAGCGTGTTTGGGTCTGTGAGGCCTGCGAACGTGCCCCAGCGGCTTTTCTTTGTAAAGCTGATGCTGCTTCTCTTTGCTCCTCTTGTGATGCGGATATCCACTCTGCTAACCCTCTTGCTAGCCGCCATCAACGTGTCCCGATTCTTCCAATTTCCGGCTACCTTTATGGTCCTCCGACGACCCTTTTAGGTGCCGATGATGAAGGCTTTGTCGGTGGTGGTCGTGAGGTGGAGGAAGAGGAGGATGAAGGTATGGAAGATGAAGATGAAGCCGCTTCATGGCTTTTGTTGAACCCTCTAAAGAATAGCAATAACAATAGTAACAACCCCAACAATAACAACATCAACAACAATAGCAATGATCATAATCAAGAGGGTAATAATGGATTTTTGTTTAGTGGTGAAGTTGATGAGTATTTGGATCTTGTGGATTGTAATTCTTGTGGTGGTGGTGGTGATAACACTTTCACTACCAATACTAATACTACAACTACTACTCATCATGATGAGTATAGTCAACAACAACAAGAAGATCATTATGGTGTTCCTCAAAAGAGCTATGTTGGGGATAGTGTTGTTCCTGTTCAACAACAGCAGGTACAGAATTTTCAACTTGGCTTGGAGTTTGAATCTTCCAAAGCTGGATTCAGTTACAACAATGGTGGTTCTATTAGTCAAAGTGTTTCAGTTTCATCAATGGATGTTGGTGTTGTACCCGAATCAACATTGAGAGATGTCTCAATGAACTATTCAAGATCTTCAAAAGGAACAATTGACCTATTTTCAGGTCCTCCTATTCAAATGCCTTCTCATTTCTCACCAATGGATAGAGAAGCCAGAGTCCTAAGGTATAGAGAGAAAAAGAAAACAAGAAAATTTGAGAAGACAATTAGGTATGCCTCAAGGAAAGCCTATGCAGAGACTCGACCGCGTATAAAAGGTCGATTCGCTAAGCGAACAGATGTAGATGCTGAAGTTGATCAAATGTTTCCCACATCACTAATTACAGATGTTGGATATGGCATTGTTCCCTCATTCTGA 1230 0.4439 MLEHEFLTTTSATGTVRSAVTWPRTCDTCRSAPCAVFCRADSAYLCAGCDARIHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHQRVPILPISGYLYGPPTTLLGADDEGFVGGGREVEEEEDEGMEDEDEAASWLLLNPLKNSNNNSNNPNNNNINNNSNDHNQEGNNGFLFSGEVDEYLDLVDCNSCGGGGDNTFTTNTNTTTTTHHDEYSQQQQEDHYGVPQKSYVGDSVVPVQQQQVQNFQLGLEFESSKAGFSYNNGGSISQSVSVSSMDVGVVPESTLRDVSMNYSRSSKGTIDLFSGPPIQMPSHFSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVDAEVDQMFPTSLITDVGYGIVPSF 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00388 409 Pfam B-box zinc finger 66 111 IPR000315 GO:0008270
Trre13g00388 409 ProSiteProfiles CCT domain profile. 340 382 IPR010402 GO:0005515
Trre13g00388 409 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 26 396 IPR045281 GO:0009909
Trre13g00388 409 CDD Bbox1_BBX-like 26 68 - -
Trre13g00388 409 CDD Bbox1_BBX-like 68 111 - -
Trre13g00388 409 ProSiteProfiles Zinc finger B-box type profile. 64 111 IPR000315 GO:0008270
Trre13g00388 409 Pfam CCT motif 340 382 IPR010402 GO:0005515
Trre13g00388 409 ProSiteProfiles Zinc finger B-box type profile. 26 68 IPR000315 GO:0008270
Trre13g00388 409 MobiDBLite consensus disorder prediction 162 191 - -
Trre13g00388 409 SMART bboxneu5 21 68 IPR000315 GO:0008270
Trre13g00388 409 SMART bboxneu5 69 111 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00388 Trre-Chr13 3018740 3021279 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00388 21 409 C2C2-CO-like Transcription Factor Family AT3G02380 53.769 2.92e-131 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Trre13g00388 zf-B_box 1.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00388 K12135 - tpra:123889374 619.772