Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00387 ATGTTGGAGCACGAATTCCTTACCACTACCTCGGCCACCGGCACCGTTAGGTCTGCGGTCACGTGGCCGCGTACATGTGACACGTGCCGCTCTGCTCCATGCGCGGTATTCTGCCGCGCAGACTCAGCGTATTTATGCGCTGGGTGTGATGCACGGATTCACGCTGCAAACCGAGTAGCTTCGAGGCACGAGCGTGTTTGGGTCTGTGAGGCCTGCGAACGTGCCCCAGCGGCTTTTCTTTGTAAAGCTGATGCTGCTTCTCTTTGCTCCTCTTGTGATGCGGATATCCACTCTGCTAACCCTCTTGCTAGCCGCCATCAACGTGTCCCGATTCTTCCAATTTCCGGCTACCTTTATGGTCCTCCGACGACCCTTTTAGGTGCCGATGATGAAGGCTTTGTCGGTGGTGGTCGTGAGGTGGAGGAAGAGGAGGATGAAGGTATGGAAGATGAAGATGAAGCCGCTTCATGGCTTTTGTTGAACCCTCTAAAGAATAGCAATAACAATAAGGGTAATAATGGATTTTTGTTTAGTGGTGAAGTTGATGAGTATTTGGATCTTGTGGATTGTAATTCTTGTGGTGGTGGTGGTGATAACACTTTCACTACCAATACTAATACTACAACTACTACTCATCATGATGAGTATAGTCAACAACAACAAGAAGATCATTATGGTGTTCCTCAAAAGAGCTATGTTGGGGATAGTGTTGTTCCTGTTCAACAACAGCAGGTACAGAATTTTCAACTTGGCTTGGAGTTTGAATCTTCCAAAGCTGGATTCAGTTACAACAATGGTGGTTCTATTAGTCAAAGTGTTTCAGTTTCATCAATGGATGTTGGTGTTGTACCCGAATCAACATTGAGAGATGTCTCAATGAACTATTCAAGATCTTCAAAAGGAACAATTGACCTATTTTCAGGTCCTCCTATTCAAATGCCTTCTCATTTCTCACCAATGGATAGAGAAGCCAGAGTCCTAAGGTATAGAGAGAAAAAGAAAACAAGAAAATTTGAGAAGACAATTAGGTATGCCTCAAGGAAAGCCTATGCAGAGACTCGACCGCGTATAAAAGGTCGATTCGCTAAGCGAACAGATGTAGATGCTGAAGTTGATCAAATGTTTCCCACATCACTAATTACAGATGTTGGATATGGCATTGTTCCCTCATTCTGA 1176 0.449 MLEHEFLTTTSATGTVRSAVTWPRTCDTCRSAPCAVFCRADSAYLCAGCDARIHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHQRVPILPISGYLYGPPTTLLGADDEGFVGGGREVEEEEDEGMEDEDEAASWLLLNPLKNSNNNKGNNGFLFSGEVDEYLDLVDCNSCGGGGDNTFTTNTNTTTTTHHDEYSQQQQEDHYGVPQKSYVGDSVVPVQQQQVQNFQLGLEFESSKAGFSYNNGGSISQSVSVSSMDVGVVPESTLRDVSMNYSRSSKGTIDLFSGPPIQMPSHFSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVDAEVDQMFPTSLITDVGYGIVPSF 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00387 391 ProSiteProfiles CCT domain profile. 322 364 IPR010402 GO:0005515
Trre13g00387 391 Pfam B-box zinc finger 66 111 IPR000315 GO:0008270
Trre13g00387 391 CDD Bbox1_BBX-like 26 68 - -
Trre13g00387 391 CDD Bbox1_BBX-like 68 111 - -
Trre13g00387 391 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 26 378 IPR045281 GO:0009909
Trre13g00387 391 Pfam CCT motif 322 364 IPR010402 GO:0005515
Trre13g00387 391 ProSiteProfiles Zinc finger B-box type profile. 64 111 IPR000315 GO:0008270
Trre13g00387 391 ProSiteProfiles Zinc finger B-box type profile. 26 68 IPR000315 GO:0008270
Trre13g00387 391 SMART bboxneu5 21 68 IPR000315 GO:0008270
Trre13g00387 391 SMART bboxneu5 69 111 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00387 Trre-Chr13 3018740 3021279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00387 21 391 C2C2-CO-like Transcription Factor Family AT3G02380 56.316 2.26e-134 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Trre13g00387 zf-B_box 1.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00387 K12135 - tpra:123889374 599.356