Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00379 ATGCAAACCAAAGAGATTAATACAGAACTCAATTATTTACTTCCAAATTCAAATCCACCTCCTTATCCATCATGTAACTACAACATGATCCAAAACACAATACCAAATCCTCAACTTCATAAATACTCAAACCAATTCTATGGTTTCAACCAAAACCCTCTACAAATTCTTCAAGACTTCAGTTCACAATCCTCATGCCTAAGCAGCAACTCAACTTCGGACGAAGCGGACGAACAAAATAAAGGACTAATCAACGAAAGAAAACACCGAAGAATGATATCAAACCGCGAGTCAGCGCGCAGGTCGCGAATGAGGAAACAAAAACAACTTGATGAGCTTTGGTCACAAGTAGTTTGGCTAAGAAATGAGAATCATCAACTACTAGATAAGCTTAATAATTTCTCAGAAACTCATGATAGAGTTGTTCAAGAAAATGTTCAATTGAAAGAAGAAGCTTCGGAACTTCGACAAATGGTTTGTGACATGCAGTTACATAGTTCATGTCTTCCTTTAAGTCCTCTTCAAGATGTTCCTAGCATATCTTCACCTCATGTTAAATCTGATTCCTCAAACCAATCAAACACAAATTCTGATGATTTCTTAGGATGA 609 0.3662 MQTKEINTELNYLLPNSNPPPYPSCNYNMIQNTIPNPQLHKYSNQFYGFNQNPLQILQDFSSQSSCLSSNSTSDEADEQNKGLINERKHRRMISNRESARRSRMRKQKQLDELWSQVVWLRNENHQLLDKLNNFSETHDRVVQENVQLKEEASELRQMVCDMQLHSSCLPLSPLQDVPSISSPHVKSDSSNQSNTNSDDFLG 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00379 202 CDD bZIP_plant_GBF1 88 139 IPR045314 GO:0003700|GO:0006355
Trre13g00379 202 SUPERFAMILY Leucine zipper domain 87 136 IPR046347 GO:0003700|GO:0006355
Trre13g00379 202 SMART brlzneu 83 147 IPR004827 GO:0003700|GO:0006355
Trre13g00379 202 MobiDBLite consensus disorder prediction 67 86 - -
Trre13g00379 202 MobiDBLite consensus disorder prediction 179 202 - -
Trre13g00379 202 Gene3D - 85 140 - -
Trre13g00379 202 FunFam BZIP transcription factor 85 136 - -
Trre13g00379 202 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 10 168 IPR044521 -
Trre13g00379 202 Pfam bZIP transcription factor 87 137 IPR004827 GO:0003700|GO:0006355
Trre13g00379 202 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 90 105 IPR004827 GO:0003700|GO:0006355
Trre13g00379 202 Coils Coil 131 158 - -
Trre13g00379 202 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 85 148 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00379 Trre-Chr13 2940550 2941158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00379 35 169 bZIP Transcription Factor Family AT3G30530 63.448 2.63e-49 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre13g00379 bZIP_1 5e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00379 - - aprc:113863596 271.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00379 13 2940550 2941158 Trre13g00379 13 2940550 2941158 ECH
Trre11g00629 11 5036907 5037506 Trre13g00379 13 2940550 2941158 PCT