Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00376 ATGACAATTGGAAATCTTGCACCTAAGACAGAGAAGAAGAAATCATCAAGAAAGAACAAGAACAAGGCTGTTGTTGTAAGTGAAAATGCACCTTTGTTGCCTAAAAGTCAAGCCCATGAAAGTGATTCTGGGTTTGATGATTTCAATGGAGCTTCATTTTCTGGTGCTGTTTTCAACTTGGCAACTACAATTATTGGTGCTGGAATCATGGCTTTGCCTGCAACTTTGAAACAGTTGGGGTTGATTCCTGGTCTTGCTGCTATACTCATCATGGCTTTTTTGACTGAGAAGTCAATTGAGCTTTTAATTAGGTTTACAAGGGCAGGGAAATCTGTTTCATATGCTGGTTTGATGGGTGATTCCTTTGGGAAATATGGAAAAGCTTTGGCACAAATTTGTGTTATTGTTAATAACATTGGTGTGCTGATTGTTTACATGATTATAATTGGTGATGTGCTTTCTGGAACATCATCAAGTGGAGAACATCACTATGGTATCCTTGAAGGATGGTTTGGCGTGCACTGGTGGACCGGACGGACATTTATTGTCCTTCTTACGACGGTTGCTGTATTTGCACCCCTAGCAAGCTTTAAGCGAATTGATTCGTTGAGATTCACATCTGCCCTTTCCGTTGCACTGGCGGTAGTTTTTCTTGTCATTGCTGTGGGAATTTCTGTTGTCAAGATTATAAGTGGAGGCATTACCATGCCTAGACTCTTCCCAGCTGTTACTGATGCAACATCAATCTTTAACCTATTCACCGTGGTTCCTGTGTTTGTGACTGCTTATATCTGCCACTACAATGTTCACAGCATAGATAATGAGCTCGAGGACAACTCACAGATGCAAGGCGTTGTACGTACAGCCCTCGGTCTATGCTCATCTGTGTACTTAATGATAAGCTTCTTTGGCTTCCTTTTATTTGGGGAAGGAACTCTTGATGATGTGCTTGCCAATTTCGATGCCGATCTTGGAATTCCTTTTGGTTCTTTGCTCAATGATGCTGTTCGTATTAGCTACGCTGCACACCTTATGCTTGTATTTCCGGTTGTCTTTTTTCCATTGCGACTCAATATAGATGGTCTTCTCTTCCCTAAGTCAAGACCTTTGGTTCTAGATAACTTCAGATTTGCATCAATGACTGTTGCGCTTATCGGTGTTATCTTCCTTGGAGCAAATTTCATACCTAGCATTTGGGATGCATTCCAGTTCACTGGAGCAACTGCTGCAGTTTGTATAGGATTCATCTTTCCAGCTGCCATCACGCTTAAGGACCGCTACAACATAGCGACTAAATCGGACAAGATTCTATGCGTTGTTTTGATAATCCTAGCAGTCTTCTCAAACATTGTGGCTATATATAGTGACGCCTATGCATTGATCAAACAGAACAAAACTAAACGTGAATGA 1410 0.4128 MTIGNLAPKTEKKKSSRKNKNKAVVVSENAPLLPKSQAHESDSGFDDFNGASFSGAVFNLATTIIGAGIMALPATLKQLGLIPGLAAILIMAFLTEKSIELLIRFTRAGKSVSYAGLMGDSFGKYGKALAQICVIVNNIGVLIVYMIIIGDVLSGTSSSGEHHYGILEGWFGVHWWTGRTFIVLLTTVAVFAPLASFKRIDSLRFTSALSVALAVVFLVIAVGISVVKIISGGITMPRLFPAVTDATSIFNLFTVVPVFVTAYICHYNVHSIDNELEDNSQMQGVVRTALGLCSSVYLMISFFGFLLFGEGTLDDVLANFDADLGIPFGSLLNDAVRISYAAHLMLVFPVVFFPLRLNIDGLLFPKSRPLVLDNFRFASMTVALIGVIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAITLKDRYNIATKSDKILCVVLIILAVFSNIVAIYSDAYALIKQNKTKRE 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00376 469 Pfam Transmembrane amino acid transporter protein 51 455 IPR013057 -
Trre13g00376 469 PANTHER AMINO ACID TRANSPORTER 43 448 - -
Trre13g00376 469 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00376 Trre-Chr13 2886473 2889945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00376 3 468 Amino Acid or Auxin Permease AAAP Family AT3G30390 68.026 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00376 K14207 - gmx:100796345 779.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00376 13 2886473 2889945 Trre13g00376 13 2886473 2889945 ECH