Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00358 ATGGCTAGGTCTGCTAAAGGCAATCAAGATGAAGAATTGGTTGATGATGACGATCAAGACCTCTTCACTGCAAACAATTCTTCTTCTCTCAACAACAATGTGAAGGTGGATGAACCTAACAGAGGGAAAAAGGCTAACCCTCATCGTTCTAAGCATTCAGAAACTGAGCAACGTAGAAGAAGCAAAATTAATGAAAGATTTCAGGTTCTGAGAGACCTGATACCTGAAAATGATCAAAAGAGAGATAAAGCTTCTTTTTTGTTGGAGGTTATTGAATATATTCAGTTCCTAAAGGAAAAGTTACAAGTTTATGAACAGTCTTATGAAGGATGGAGTCAGGAGCCAACTAAATTAATTCCATGGAGAAATCATCATGGACCTGCTGAAAATACTACAGATGCTTCTCGAGCTATTCAAAATGGGTCTGTTCATGAAAAAAATAACAATGTCTCTCCGTCATTGCCTAAAATTGTACAGAACCCAGTAGAGTCTGATCCCTCCATAACTATTCAGAAGGGTTGCACCCCTGGTTCATCCGCAGAAGCAGCTCCACTGGCCATGCAAATGCGATTGGACATGTTTGATCCGGTTGTTAGCAGCGGTATGGTGACTCAACAGATGATGGAGTTGCCTGTATCTAATGCTGACATGGCTACCAATCTCCAGCATCAAGTATGGCTTAGCAAACCAAACAAGGACAGCTATATTGTTCCAAATAACACACTGAAGGAACAAGAGGAGATGAAAATTGAAAGTGGATCAGAGTCAGATAGTGTCTCAAGTGCCTATTCTCAAAGAATATTGGGCACTCTCACCCAAGCGCTGCAATCTTCAGGTGTAGATTTGACCCAGGCCAGTGTCTCAGTGGATATCGATGTTGGTCGGCGAGCAAATACTGGGTTGACCCCCTGCCAATATAGCTCAAAGGGTCATCATGAAAATCCATTTGTGAGCAATCAAGCAATGGCATGTTCAGGAATGGATTACTTCAGTGAGGATTCTGAACAGAGTCCAAAGAGGTTCAGACAAGAATCAAGCTAG 1041 0.4188 MARSAKGNQDEELVDDDDQDLFTANNSSSLNNNVKVDEPNRGKKANPHRSKHSETEQRRRSKINERFQVLRDLIPENDQKRDKASFLLEVIEYIQFLKEKLQVYEQSYEGWSQEPTKLIPWRNHHGPAENTTDASRAIQNGSVHEKNNNVSPSLPKIVQNPVESDPSITIQKGCTPGSSAEAAPLAMQMRLDMFDPVVSSGMVTQQMMELPVSNADMATNLQHQVWLSKPNKDSYIVPNNTLKEQEEMKIESGSESDSVSSAYSQRILGTLTQALQSSGVDLTQASVSVDIDVGRRANTGLTPCQYSSKGHHENPFVSNQAMACSGMDYFSEDSEQSPKRFRQESS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00358 346 MobiDBLite consensus disorder prediction 37 63 - -
Trre13g00358 346 Pfam Helix-loop-helix DNA-binding domain 49 97 IPR011598 GO:0046983
Trre13g00358 346 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 343 IPR044295 GO:0003700|GO:0006351|GO:0046983
Trre13g00358 346 MobiDBLite consensus disorder prediction 1 63 - -
Trre13g00358 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 97 IPR011598 GO:0046983
Trre13g00358 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 126 IPR036638 GO:0046983
Trre13g00358 346 FunFam BHLH domain class transcription factor 45 117 - -
Trre13g00358 346 Coils Coil 94 114 - -
Trre13g00358 346 CDD bHLH_AtBIM_like 49 122 - -
Trre13g00358 346 MobiDBLite consensus disorder prediction 20 36 - -
Trre13g00358 346 Gene3D - 45 118 IPR036638 GO:0046983
Trre13g00358 346 SMART finulus 53 103 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00358 Trre-Chr13 2765442 2770907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00358 3 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 42.767 2.54e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre13g00358 HLH 8.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00358 - - mtr:11428511 555.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00358 13 2765442 2770907 Trre13g00358 13 2765442 2770907 ECH