Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00356 ATGGTGGTTGTTTTGGCTTCATCCTCTGATGCTGGTGGCGGGATTGGATGTTGGGATCTTCACACAGGTTCTGAACAGATCCGCTACAAATCACTTTCTTCACCTTGTCATGGACTTGCCTCTGTTGGTGATCGTTTCCTTGCATCTTCTCAGCTTCGAGACACAGCGACTTCTGCTGGTTCTGTTTTCTTCTGGTCCTGGTCCAAGCCTCAAGTTGAAGTTAAGAGCTTTCCTGCCGAACCTATTACACCTCTTGCTGCTAATCACAGTGGCACCTATCTAGTTGGTGGAGGTTTGTCAGGTGATATATACTTGTGGGAGGTTGAAACCGGCAAATTGCTCAAAAAGTGGCATGGTGATAATACTGCTGTTACTTGCTTGGTGTTTTCTGAAGATGACTCACTTCTAATATCTGGTTTTAAAAATGGAAGCATACGAGTTTGGTCTCTCTTAATGATATTTGATGATGTGAGAAGACGGGAAGCAAGCAAGATTTACGAGTATAGTTTTTCAGAGCACACCTTGTGTGTAAATGATGTTGTGATTGGTTATGGAGGGTGCAATGCAATTATTGCTTCAGCATCAGATGATCGGACCTGTAAGGTATGGAGCTTATCTAATGGAATGCTACAAAGAAACATTATATTCCCTACAAAAATTAAAGCTATTGCACTGGATCCTGCTGAACATGCTCTTTATGCTGGCGGTGAAGATGGAAAAATATATATTGTTGCACTTAACACCACAAGAATCAGTACTGATAACCATGTTTCATATATCATCGGTTCATTTTCTAACCACAGCAAGGCAGTTACTTGCTTAGCTTATAGCGCTGGCGAGAATTATTTAATATCTGGATCTGATGATGGAATAGTTCGAGTTTGGAATGCCAGTACTCATAACATCATCCGTGTGTTTAAGCATGCTAAAGGACCAATTACAAATATTCTTGTTCTTAGCCCAGAGAATGATTCAAGTAATCACATGTCATCTAATTCCTCAAAAAAGAAGGGAGCTCAATTTCCTCCTTTGGAAAAATATGCAAATCCAATAGATGAAGACTCAGATATAAAGACTATTGTCAGTCTTGGGGGTAGCAAGAGATGCATGGATGATGTTTCATACCTTAGTTCTCATCTGATTTCTAGTTACAGTAAGGAACTTCAGAATCAAGGTTCGGCCGCTGCTTCTGAAATGGAGATAGAGAAACTAAAACGTGATTGCCAAAAGTCAATGCAGATGGTTAATCAATGGAAGAAAATGTATGAAAACTTGCATCAATTTTGTGTGAAGGAGCTGATAGATGAAAATGAGAAATAA 1320 0.3977 MVVVLASSSDAGGGIGCWDLHTGSEQIRYKSLSSPCHGLASVGDRFLASSQLRDTATSAGSVFFWSWSKPQVEVKSFPAEPITPLAANHSGTYLVGGGLSGDIYLWEVETGKLLKKWHGDNTAVTCLVFSEDDSLLISGFKNGSIRVWSLLMIFDDVRRREASKIYEYSFSEHTLCVNDVVIGYGGCNAIIASASDDRTCKVWSLSNGMLQRNIIFPTKIKAIALDPAEHALYAGGEDGKIYIVALNTTRISTDNHVSYIIGSFSNHSKAVTCLAYSAGENYLISGSDDGIVRVWNASTHNIIRVFKHAKGPITNILVLSPENDSSNHMSSNSSKKKGAQFPPLEKYANPIDEDSDIKTIVSLGGSKRCMDDVSYLSSHLISSYSKELQNQGSAAASEMEIEKLKRDCQKSMQMVNQWKKMYENLHQFCVKELIDENEK 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00356 439 Gene3D - 3 158 IPR015943 GO:0005515
Trre13g00356 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 299 - -
Trre13g00356 439 MobiDBLite consensus disorder prediction 324 338 - -
Trre13g00356 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 117 150 IPR001680 GO:0005515
Trre13g00356 439 ProSitePatterns Trp-Asp (WD) repeats signature. 283 297 IPR019775 -
Trre13g00356 439 Gene3D - 159 370 IPR015943 GO:0005515
Trre13g00356 439 PRINTS G protein beta WD-40 repeat signature 136 150 IPR020472 -
Trre13g00356 439 PRINTS G protein beta WD-40 repeat signature 283 297 IPR020472 -
Trre13g00356 439 PRINTS G protein beta WD-40 repeat signature 191 205 IPR020472 -
Trre13g00356 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 305 IPR001680 GO:0005515
Trre13g00356 439 MobiDBLite consensus disorder prediction 324 347 - -
Trre13g00356 439 Coils Coil 401 421 - -
Trre13g00356 439 Pfam WD domain, G-beta repeat 169 204 IPR001680 GO:0005515
Trre13g00356 439 Pfam WD domain, G-beta repeat 113 149 IPR001680 GO:0005515
Trre13g00356 439 Pfam WD domain, G-beta repeat 261 296 IPR001680 GO:0005515
Trre13g00356 439 SMART WD40_4 257 296 IPR001680 GO:0005515
Trre13g00356 439 SMART WD40_4 110 149 IPR001680 GO:0005515
Trre13g00356 439 SMART WD40_4 163 204 IPR001680 GO:0005515
Trre13g00356 439 SMART WD40_4 70 107 IPR001680 GO:0005515
Trre13g00356 439 SMART WD40_4 207 245 IPR001680 GO:0005515
Trre13g00356 439 PANTHER WD-REPEAT PROTEIN 18 2 434 IPR045227 -
Trre13g00356 439 SUPERFAMILY WD40 repeat-like 10 319 IPR036322 GO:0005515
Trre13g00356 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 117 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00356 Trre-Chr13 2719659 2722988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00356 80 326 Eukaryotic Initiation Factors Gene Family AT2G46290 22.348 2.16e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00356 K14829 - gmx:100791195 612.453