Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00347 ATGGGTTCTATTTGTTCTTGTTTGAGTGTTGCTGATTTCGAAGATTACGCGAATCCACATAGTCATGTATATAGGAACTGTGTGTGCGGCGGTTGCTTCCTACAAAACCTTTTGGCTGTTTATGCATCAATATTCCGGAGAGGGGAAATGCAGCCGCTTCCTTCATCAATACAGGGGGCAGCGTCTATGACTTCTACCGCAGCACTTGATAATTCTCTATCCGACATATACCGTTCTCCTCCAAGGCCGTTGCCTTATGATGTAGACCCTAGGCATTTTCGCTCACAGCAAGACGGACTAGTTTCAAGACGTGAGAAGGGTTCCAGTCATTTAAATGAGGAGTCAGAACCTCTAAGGGGTGATTTAGATGTAGATCCAGAATCTTTGAACTCAAGTGGTAAATGGAACGAATCCACTGGCAAAGATGTGTCAAAGGAATACCGTTCGAAGTCCATAGTAAGACTTTCGTCAGCAAAACTTACAACTGAACCTGCGTTTGTGTACGCATCATCAGAAGAGGAGGATGTTTGTCCAACATGTCTTGAAGAATACACTGAAGAGAATCCGAAGATTATGACAAAATGTTCTCATCATTATCATCTTGGTTGCATATATGAGTGGATGGAGAGAAGTGACACCTGTCCTGTTTGTGGGAAGGTGATGCTATTCGATGAAACGACTTAA 684 0.4313 MGSICSCLSVADFEDYANPHSHVYRNCVCGGCFLQNLLAVYASIFRRGEMQPLPSSIQGAASMTSTAALDNSLSDIYRSPPRPLPYDVDPRHFRSQQDGLVSRREKGSSHLNEESEPLRGDLDVDPESLNSSGKWNESTGKDVSKEYRSKSIVRLSSAKLTTEPAFVYASSEEEDVCPTCLEEYTEENPKIMTKCSHHYHLGCIYEWMERSDTCPVCGKVMLFDETT 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00347 227 CDD RING-H2_AIRP1-like 173 221 - -
Trre13g00347 227 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Trre13g00347 227 Pfam RING-H2 zinc finger domain 172 217 IPR024766 GO:0008270
Trre13g00347 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 61 225 - -
Trre13g00347 227 MobiDBLite consensus disorder prediction 98 141 - -
Trre13g00347 227 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 224 - -
Trre13g00347 227 SUPERFAMILY RING/U-box 171 224 - -
Trre13g00347 227 SMART ring_2 177 217 IPR001841 -
Trre13g00347 227 MobiDBLite consensus disorder prediction 98 123 - -
Trre13g00347 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 223 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00347 Trre-Chr13 2672388 2675754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00347 1 226 C3H Transcription Factor Family AT5G15790 55.844 3.64e-90 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00347 - - gmx:100788192 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00347 13 2672388 2675754 Trre13g00347 13 2672388 2675754 ECH