Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00343 ATGGAAGACATCTTGGAAAGATATGAGAGACAAAACCATACAGAGCTTACTGGAGCTACCAATGAAACACAGGGAAACTGGTCTTTTGAATACATGAAGCTCACTGCTAAAGTTCAAGTCTTGGAGAGGAACTTAAGGAACTTTGTGGGCAATGATCTGGACCCTTTGAGTGTGAAAGAGCTTCAAAGTTTGGAGCAACAGCTTGACACATCGCTAAAGCGTATCCGAACAAGAAAGAACCAAGTTATGAATCAATCCATCTCAGAGCTGCATAAAAGGGCAAGGACATTACAGGAGCAAAACAGCAAGTTAGCAAAGACAAAGGAGAAAGAGAAGACAGTGAATGAACATCATCCAAAGAGAGGCCTAGAAACCATTGGCTTAGGGCAATGTTCATCCACTCTCAACTTGATTTGTCAACCAGAGGTGCCACCACCACAAAGATTGGTTCCTTCTCTAAATCTCAGGGATGCCTTACAAGCAAGAGGGACATTGGAAATGGAAGAAACAGGTGAACCTCAAACTGTTCCTAGAAGCAATAATAGTCTCATTCCAGCATGGATGCTACAACATCTTACGAACTAG 585 0.4239 MEDILERYERQNHTELTGATNETQGNWSFEYMKLTAKVQVLERNLRNFVGNDLDPLSVKELQSLEQQLDTSLKRIRTRKNQVMNQSISELHKRARTLQEQNSKLAKTKEKEKTVNEHHPKRGLETIGLGQCSSTLNLICQPEVPPPQRLVPSLNLRDALQARGTLEMEETGEPQTVPRSNNSLIPAWMLQHLTN 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00343 194 Coils Coil 61 107 - -
Trre13g00343 194 ProSiteProfiles K-box domain profile. 24 116 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre13g00343 194 Pfam K-box region 22 106 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00343 Trre-Chr13 2648066 2650347 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00343 1 190 MADS-box Gene Family AT5G60910 45.361 7.98e-38 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00343 K09264 - gmx:100788956 228.794