Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00342 ATGTTCTCTACCAAAGGAAAACTTTTTGAGTATTCCTCTGCACCAAGCATGGAAGACATCTTGGAAAGATATGAGAGACAAAACCATACAGAGCTTACTGGAGCTACCAATGAAACACAGGGAAACTGGTCTTTTGAATACATGAAGCTCACTGCTAAAGTTCAAGTCTTGGAGAGGAACTTAAGGAACTTTGTGGGCAATGATCTGGACCCTTTGAGTGTGAAAGAGCTTCAAAGTTTGGAGCAACAGCTTGACACATCGCTAAAGCGTATCCGAACAAGAAAGAACCAAGTTATGAATCAATCCATCTCAGAGCTGCATAAAAGGGCAAGGACATTACAGGAGCAAAACAGCAAGTTAGCAAAGACAAAGGAGAAAGAGAAGACAGTGAATGAACATCATCCAAAGAGAGGCCTAGAAACCATTGGCTTAGGGCAATGTTCATCCACTCTCAACTTGATTTGTCAACCAGAGGTGCCACCACCACAAAGATTGGTTCCTTCTCTAAATCTCAGGGATGCCTTACAAGCAAGAGGGACATTGGAAATGGAAGAAACAGGTGAACCTCAAACTGTTCCTAGAAGCAATAATAGTCTCATTCCAGCATGGATGCTACAACATCTTACGAACTAG 633 0.4218 MFSTKGKLFEYSSAPSMEDILERYERQNHTELTGATNETQGNWSFEYMKLTAKVQVLERNLRNFVGNDLDPLSVKELQSLEQQLDTSLKRIRTRKNQVMNQSISELHKRARTLQEQNSKLAKTKEKEKTVNEHHPKRGLETIGLGQCSSTLNLICQPEVPPPQRLVPSLNLRDALQARGTLEMEETGEPQTVPRSNNSLIPAWMLQHLTN 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00342 210 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 132 - -
Trre13g00342 210 Pfam K-box region 38 122 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre13g00342 210 Coils Coil 77 123 - -
Trre13g00342 210 ProSiteProfiles K-box domain profile. 40 132 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00342 Trre-Chr13 2644519 2650347 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00342 1 130 MADS-box Gene Family AT1G26310 51.111 1.15e-39 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00342 K09264 - gmx:100788956 253.062