Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00341 ATGGGAAGAGGAAGAGTTGAATTGAAGAGGATAGAGAACAAAATAAATCGACAAGTTACATTTGCTAAGAGAAGAAATGGACTTCTTAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCTACTCGTGGCAAGCTTTATGAATTTTGTAGCACTTCTAACATGCTCAAAACTCTTGATAGGTATCAGAAATGCAGTTATGGTGCTGTTGAAGTTAGCAAACCTGCCAAAGAACTTGAGAGCAGCTACCGTGAATACTTGAAGCTGAAACAAAGATTTGAAAATCTTCAAAGAACCCAAAGAAATCTTTTAGGGGAAGACCTAGGCCCACTAGGTTCTAAAGATCTTGAGCAGCTTGAAAGGCAATTGGATTCATCTCTCAAGCAAGTCAGGTCTACAAAGACACAATTCATGCTGGATCAATTAGCTGATCTTCAAAATAAGGAACAGATGTTGGTAGAAGCAAACAGATCCTTGTCAATTAAGTTGGATGAAATCAATTCCAGAAATCAGTACAGACAATCATGGGAAGCTGGTGAACAAAGCATGCAATATGGTGGTCCACAGAATGCTCACTCTCAGAGCTTCTTCCAGCAGTTGGAGTGCAATCCCACATTGCAGATTGGTTCTGATTATAGGTACAACAATGTAGCTACAGATCAGATAGCTTCAACAAGTCAAGGTCAACAACAAGTGAATGGATTTGTTCCTGGATGGATGCTTTAA 750 0.3907 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSTSNMLKTLDRYQKCSYGAVEVSKPAKELESSYREYLKLKQRFENLQRTQRNLLGEDLGPLGSKDLEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVEANRSLSIKLDEINSRNQYRQSWEAGEQSMQYGGPQNAHSQSFFQQLECNPTLQIGSDYRYNNVATDQIASTSQGQQQVNGFVPGWML 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00341 249 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Trre13g00341 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre13g00341 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre13g00341 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre13g00341 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre13g00341 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 188 - -
Trre13g00341 249 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre13g00341 249 Coils Coil 124 144 - -
Trre13g00341 249 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Trre13g00341 249 Coils Coil 84 114 - -
Trre13g00341 249 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre13g00341 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre13g00341 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trre13g00341 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre13g00341 249 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Trre13g00341 249 FunFam MADS-box transcription factor 1 13 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00341 Trre-Chr13 2630486 2635493 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00341 1 249 MADS-box Gene Family AT5G15800 72.624 1.68e-121 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre13g00341 K-box 6.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00341 K09264 - gmx:100785322 432.18