Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00340 ATGGGAAGAGGAAGAGTTGAATTGAAGAGGATAGAGAACAAAATAAATCGACAAGTTACATTTGCTAAGAGAAGAAATGGACTTCTTAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCTACTCGTGGCAAGCTTTATGAATTTTGTAGCACTTCTAACATGCTCAAAACTCTTGATAGGTATCAGAAATGCAGTTATGGTGCTGTTGAAGTTAGCAAACCTGCCAAAGAACTTGAGCAGAGCAGCTACCGTGAATACTTGAAGCTGAAACAAAGATTTGAAAATCTTCAAAGAACCCAAAGAAATCTTTTAGGGGAAGACCTAGGCCCACTAGGTTCTAAAGATCTTGAGCAGCTTGAAAGGCAATTGGATTCATCTCTCAAGCAAGTCAGGTCTACAAAGACACAATTCATGCTGGATCAATTAGCTGATCTTCAAAATAAGGAACAGATGTTGGTAGAAGCAAACAGATCCTTGTCAATTAAGTTGGATGAAATCAATTCCAGAAATCAGTACAGACAATCATGGGAAGCTGGTGAACAAAGCATGCAATATGGTGGTCCACAGAATGCTCACTCTCAGAGCTTCTTCCAGCAGTTGGAGTGCAATCCCACATTGCAGATTGGTTCTGATTATAGGTACAACAATGTAGCTACAGATCAGATAGCTTCAACAAGTCAAGGTCAACAACAAGTGAATGGATTTGTTCCTGGATGGATGCTTTAA 753 0.3918 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSTSNMLKTLDRYQKCSYGAVEVSKPAKELEQSSYREYLKLKQRFENLQRTQRNLLGEDLGPLGSKDLEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVEANRSLSIKLDEINSRNQYRQSWEAGEQSMQYGGPQNAHSQSFFQQLECNPTLQIGSDYRYNNVATDQIASTSQGQQQVNGFVPGWML 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00340 250 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Trre13g00340 250 Coils Coil 125 145 - -
Trre13g00340 250 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Trre13g00340 250 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre13g00340 250 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre13g00340 250 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre13g00340 250 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre13g00340 250 Coils Coil 95 115 - -
Trre13g00340 250 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Trre13g00340 250 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre13g00340 250 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trre13g00340 250 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre13g00340 250 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 189 - -
Trre13g00340 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre13g00340 250 FunFam MADS-box transcription factor 1 13 88 - -
Trre13g00340 250 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00340 Trre-Chr13 2630486 2635493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00340 1 250 MADS-box Gene Family AT5G15800 72.348 1.20e-119 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre13g00340 K-box 1.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00340 K09264 - gmx:100786066 429.869