Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00334 ATGAGGCTTAATATTAATATCTCAGTTCTATGTGTCATTGTGCTATTTTCTTATGCAGCTGCGTATGATCCTTTGGATCCCAACGGAAATATAACGATCAAATGGGATGTTGTGTCTTGGACACCAGATGGCTATGTGGCAGTGGTAACCTTGAGCAATTTCCAAATGTATCGACACATAATGAATCCAGGATGGACATTAGGATGGTCATGGGCTAAGAAAGAAGTCATATGGTCAATGGTAGGATCTCAAACAACTGAGCAAGGAGACTGCTCTAAATTCAAAGGCAATGTACCTCATTGTTGCAAGAAAACTCCTACAGTTGTAGACTTTCTACCTGGTGTACCTTACAATCAACAATTCTCAAACTGTTGTAAAGGTGGAGTTGTAGCAGCATGGGGACAAGATCCTTCATCAGCTGTTTCATCTTTCCAAATTAGTGTTGGACAAGGTGGTACTTCAAACAAGACAGTGAAACTTCCTAAAAACTTTACTCTCTTGGCTCCTGGACCTGGTTATACTTGTGGTCCTGCTAAGGTTGTTCCTTCCACCACTTTCCTCACCGCAGATAAGCGCCGCAAGACTCAAGCACTTATGACATGGAATGTTACATGTACATACTCACAATTTCTTGCAAGAAAGAATCCAAGTTGTTGTGTATCTTTATCATCCTTCTATAATGAGACTATTACCCCTTGTCCTTCTTGTGCCTGTGGCTGCCAGAATAAGAAGAATTGTGTCAAGGGTAATTCCAAATTTCTGGACATGGTAGGGATACATACTCCAAAGAGGGACAATGAACCATTGCTTCAGTGCACTCATCATATGTGCCCTATCAGGGTACACTGGCATGTGAAGACTAACTATAAGGACTATTGGAGAGTTAAGATGGCAGTGACAAATTTCAATTACAGATTGAACTATTCTCTTTGGACTCTTGCAGTACAGCATCCAAATCTTAACAATGTCACCCAAGTTTTCAGCTTTGATTACAAGCCTTTGCTTCCCTATCAATCCATAAATGACACTGGTATGTTCTATGGAATGAAATTCTTTAATGATCTCTTAATGGAAGCTGGACCAAGTGGAAATGTTCAATCAGAAGTGCTTCTTCAAAAGAACAAAGAAACTTTCACATTCAACCAAGGATGGGCATTTCCTAGGAGAGTCTACTTCAATGGTGAAGAATGCATGATGCCTTCACCAGATTCCTACCCATACCTACCTAATTCATCTCCTAAGAATGTCCTCAACTTCCAAACATTCATTATCTCATTCCTTCTCTTCCTAGCTCTTTGGTGA 1302 0.4025 MRLNINISVLCVIVLFSYAAAYDPLDPNGNITIKWDVVSWTPDGYVAVVTLSNFQMYRHIMNPGWTLGWSWAKKEVIWSMVGSQTTEQGDCSKFKGNVPHCCKKTPTVVDFLPGVPYNQQFSNCCKGGVVAAWGQDPSSAVSSFQISVGQGGTSNKTVKLPKNFTLLAPGPGYTCGPAKVVPSTTFLTADKRRKTQALMTWNVTCTYSQFLARKNPSCCVSLSSFYNETITPCPSCACGCQNKKNCVKGNSKFLDMVGIHTPKRDNEPLLQCTHHMCPIRVHWHVKTNYKDYWRVKMAVTNFNYRLNYSLWTLAVQHPNLNNVTQVFSFDYKPLLPYQSINDTGMFYGMKFFNDLLMEAGPSGNVQSEVLLQKNKETFTFNQGWAFPRRVYFNGEECMMPSPDSYPYLPNSSPKNVLNFQTFIISFLLFLALW 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00334 433 Pfam COBRA-like protein 45 208 IPR006918 GO:0010215|GO:0016020
Trre13g00334 433 PIRSF COBRA 1 433 IPR006918 GO:0010215|GO:0016020
Trre13g00334 433 PANTHER PROTEIN COBRA 8 426 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00334 Trre-Chr13 2545989 2548662 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00334 21 432 COBRA Gene Family AT3G29810 68.765 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00334 - - gmx:100783410 838.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00334 13 2545989 2548662 Trre11g00592 11 4685046 4686790 PCT