Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00333 ATGGGTTTCTCTTTGTTATCTCCTTGCATTTTGTTCTTCGTACTACTTTCTTCCACTCGCTTCACTTTAACAGATGCTTATGACCCACTCGACCCAAACGGGAATATCACAATCAAATGGGACGTTGTGCAATGGACACCTGATGGTTATATGGCTGTTGTTACGATGACCAACTTCCAACAATATCGACACATTGCTTCGCCTGGCTGGTCCCTAGGATGGACGTGGGCGAAAAAAGAGGTAATCTGGAGCATGGTGGGATCGCAGACCACCGAACAGGGTGACTGTTCAAAATTCAAAGGAAATGTTCCCCATTGCTGTAAGAAGAACCCTACAGTTGTTGATTTTCTTCCGGGAACACCTTATAATCAGCAAGTCGCGAATTGCTGCAAAGGCGGGGTGCTCAGTTCATGGGCACAGGATCCTACCAATGCAGTGGCGTCATTTCAGATCAGTGTTGGTAGGGCTGGAACCACAAATAAAACGGTTAAAGTCCCTAAAAACTTCACCTTGAAAGCACCGGGACCCGGTTATACTTGTGGGCCGGCAAAAATTGTGAGACCTACTCAGTTTCTTCAGCCAGATAAACGGAGAGTAACACAAGCACTCATGACTTGGAATGTTACGTGCACATATTCTCAATTTCTTGCGCAGAAAACTCCCACTTGTTGCGTGTCCCTTTCAGCCTTCTATAACGAAACGATTGTACCCTGCCCAACTTGTGCATGTGGATGCCAGAGTAACTCATCGCAGTCGGGTAGTTGTGTAAATCCAAATACGCCACATTTAGCCTCGGTTGTTGCTGGTGACGGAAAGAATAATTTATCACCTTTGGTGCAATGTACCAGCCATATGTGCCCAATCCGAATCCATTGGCATATCAAAGTGAACTACAAGGAATACTGGCGTGTGAAGGTTTCTATAACTAATTTTAATTACCGTATGAATTACTCCAACTGGAACTTGGTAGTCCAGCATCCAAACTTCGATAATCTGACCCAGTTATTCAGTTTTGACTACAAGTCATTAAATCCTTATGGTTCAATAAATGATACAGCAATGTTGTGGGGAGTGAAGTTCTATAATGATTTTCTTAATCAGGCTGGTCCTAATGGCAATGTTCAATCTGAGGTACTCTTCCGAAAGGATGATATGTCAACTTTCAGTTTTGGAAAGGGTTGGGGTTTCCCTCATAGAGTCTACTTCAACGGCGACAACTGCGTGATGCCACCGCCCGATGCGTATCCATGGTTACCTAATGCCGGTTCTCGGCAAGAGGTTTCATTGTTTGCTTTAGTAATGGCCTCCTTGGTAGTCTTTGTATTTTATGCGTACATTTAA 1341 0.4407 MGFSLLSPCILFFVLLSSTRFTLTDAYDPLDPNGNITIKWDVVQWTPDGYMAVVTMTNFQQYRHIASPGWSLGWTWAKKEVIWSMVGSQTTEQGDCSKFKGNVPHCCKKNPTVVDFLPGTPYNQQVANCCKGGVLSSWAQDPTNAVASFQISVGRAGTTNKTVKVPKNFTLKAPGPGYTCGPAKIVRPTQFLQPDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSAFYNETIVPCPTCACGCQSNSSQSGSCVNPNTPHLASVVAGDGKNNLSPLVQCTSHMCPIRIHWHIKVNYKEYWRVKVSITNFNYRMNYSNWNLVVQHPNFDNLTQLFSFDYKSLNPYGSINDTAMLWGVKFYNDFLNQAGPNGNVQSEVLFRKDDMSTFSFGKGWGFPHRVYFNGDNCVMPPPDAYPWLPNAGSRQEVSLFALVMASLVVFVFYAYI 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00333 446 PANTHER PROTEIN COBRA 15 436 IPR006918 GO:0010215|GO:0016020
Trre13g00333 446 Pfam COBRA-like protein 50 213 IPR006918 GO:0010215|GO:0016020
Trre13g00333 446 PIRSF COBRA 3 446 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00333 Trre-Chr13 2541788 2545192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00333 1 441 COBRA Gene Family AT3G02210 71.778 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00333 - - gmx:100783820 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00333 13 2541788 2545192 Trre13g00333 13 2541788 2545192 ECH
Trre11g00592 11 4685046 4686790 Trre13g00333 13 2541788 2545192 PCT
Trre13g00333 13 2541788 2545192 Trre11g00591 11 4673888 4675326 PCT