Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00330 ATGAAACCTCTTACATGGAAACAAAGGCTAAAGATATGCATAGGAGTAGCATGTGGATTACACTTTCTTCACACAGGAACCAAACGTGCCATCTTTCATTGTGACATTCATTCTCATAAGATTTTATTGGATAGCAATATGGTGCCTAAACTCTCAGATTTTTGGATTTCCTTGCAAGGTCCTTTGTTTACTTCAATGCCAAAACCAAAGTCTATATTAAATGATAACATTGTTGGTTCATATGGTTATGTGGCCCCCGAGATTTTAGAAAACAGTAAAGCAACATATAAGTGTGACGCTTACTCTTTTGGTATACTTCTACTAGAAGTGGTATGTTGCGAAAAGTTAGAAAATGTTAAGAAACAGAGACTCCCAATGGAAGAGAATATTGATGTGAATATCAAAGGAAACATTGCACCAGAATGTTGGGAAATATTTGTGGATGTCACAAAAAGATGCTTAAAGTATGATCCAAATGAACGACCAACAATGGGTGAAGTGGAGGTGCAACTTGAACTTGCTCTATCACTGCAGGAAAAAGCAGATAATAACAAAAACACCAATGTTGATGATGATCATTATATACTACCATCTACAACCATTATTGATGAATAA 615 0.3545 MKPLTWKQRLKICIGVACGLHFLHTGTKRAIFHCDIHSHKILLDSNMVPKLSDFWISLQGPLFTSMPKPKSILNDNIVGSYGYVAPEILENSKATYKCDAYSFGILLLEVVCCEKLENVKKQRLPMEENIDVNIKGNIAPECWEIFVDVTKRCLKYDPNERPTMGEVEVQLELALSLQEKADNNKNTNVDDDHYILPSTTIIDE 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00330 204 Gene3D Transferase(Phosphotransferase) domain 1 1 197 - -
Trre13g00330 204 Pfam Protein tyrosine and serine/threonine kinase 3 170 IPR001245 GO:0004672|GO:0006468
Trre13g00330 204 SUPERFAMILY Protein kinase-like (PK-like) 3 176 IPR011009 -
Trre13g00330 204 PANTHER OS07G0166700 PROTEIN 4 178 IPR045272 GO:0004714|GO:0006468
Trre13g00330 204 ProSiteProfiles Protein kinase domain profile. 1 173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00330 204 SMART serkin_6 1 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00330 Trre-Chr13 2521883 2523194 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00330 1 187 Receptor kinase-like Gene Family AT1G30570 39.320 1.40e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trre13g00330 PK_Tyr_Ser-Thr 1.1e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00330 - - gmx:100775244 271.166