Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00328 ATGGTACCAAAACTCTCGCATCTTGGATTTTCCTTACAAGGGAAGCTTTCTAAATCGAATCCAAAACCAATTAAAGTCGACATCCTTATTGGTACATTGCGTTACATGGCGCCAGAGTGTCTCTTAACCAACACTTTCACAGATAAATGTGACGTTTATTCCTTTGGTATAGTTCTACTCGAAGTAGCATGCACTAACTACAAGAATACCATCTTTGATAAGATGATCATGTTAGAGGACACAGATATGTTTACAAATCAGTCATTTAATCCAGCTAACTTTTTGGAGAGGTTTCCAGCTAATGAGATTATTGATCCAATTCTCATGAGATTGATTGCACCAAAATGTTTGGTAGTGTTCATGGATATCATGAAAAGATGCTTGAATATAGAACCAAATGAAAGACCAACAATGGGCGAGGTTGAGGTTGAACTTGAGCATGCTTTGGCACTGCAACAGGAAGCAGATGATGGGAAAAGTAATGGTGATTTTAACTTTTTTCCAACCACGATTTCTTCCTAA 522 0.3755 MVPKLSHLGFSLQGKLSKSNPKPIKVDILIGTLRYMAPECLLTNTFTDKCDVYSFGIVLLEVACTNYKNTIFDKMIMLEDTDMFTNQSFNPANFLERFPANEIIDPILMRLIAPKCLVVFMDIMKRCLNIEPNERPTMGEVEVELEHALALQQEADDGKSNGDFNFFPTTISS 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00328 173 SUPERFAMILY Protein kinase-like (PK-like) 2 145 IPR011009 -
Trre13g00328 173 Gene3D Transferase(Phosphotransferase) domain 1 1 166 - -
Trre13g00328 173 PANTHER OS07G0166700 PROTEIN 1 152 IPR045272 GO:0004714|GO:0006468
Trre13g00328 173 Pfam Protein tyrosine and serine/threonine kinase 31 143 IPR001245 GO:0004672|GO:0006468
Trre13g00328 173 ProSiteProfiles Protein kinase domain profile. 1 150 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00328 Trre-Chr13 2517216 2518352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00328 31 163 Receptor kinase-like Gene Family AT2G21480 34.074 7.46e-17 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trre13g00328 PK_Tyr_Ser-Thr 9.3e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00328 - - mtr:25497582 242.276