Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00325 ATGCTTTTAAATTATTTAAAGCATAAAAGTTCATACCAGAAACAGTTTCCATCATTTATAAAAGAGCTATGCTATCAATTTTCTCTGGAAGATCTTAAGATATCAACCAATAACTTTGATAATGATCGAAAAATTGGAGAATCACAATACTATATAATGTACAAAGGTTATCTCAAACATAATGGCGAAAATGATTATCCAATAGCATTGATGCGGATGAGAAATTTAGATGGCGAGTGGCAGTTTCAGAAAGAAATTGAATTCAACTGCAAGCTTTGTCATCCGAATTTGACATCTTTTATAGGATTTTGTGACGAAAAAGATGAGAAAATTCTAGTGTGCCGAAAAGATGACATTGTCAATGGCTCTCTCAATGATCTCTTACTTTCAAGGGATATGGAATCACTGTCATGGAAGAAAAGGCTTGAAATATGCATTGGAGCTGCAAAAGGACTACACTACCTTCACACTGGAGCAAAGCGCACAATTTTTCACCGTGACATAAAGCCTCACAACATTCTTTTAGATAATAGTATGGTACCAAAACTCTGGCAACTTGGATTTTCCTTACAAGGGAAGCTTTCTAACTCGAAGTCAATACCAATTGAAGTCGATTTAATTTACGGTACACTTGGCTACTTGGCACCAGAGTATGGCGCATTTGGAACTTTCACAGATAAATGTGACGTTTACTCTTTTGGCATGGTTCTACTAAATGTATTATGCACAAACTACAACCTTACGACCATGGATAAGATGAGAATGTTCCGGTTGGAGGAGGAAATTGCGTTTTTAGAAGACCATAATGAGGTTTTAGATGAGAATATACTTAGAGGAGATAACTTTTGGGACAAGTTCCTAGATGCCGAGATTATTGATCCCGTTCTCATGAGATTGATTGCTTTACCATGTTTGGAAGTGTTCATGGATATCGCGAAAAGATGCTTGAAATATGATCCAAATGAAAGACCAGCAATGGGTGAAGTTGAGGTTGAACTCGAGCATGCTCTGGCAGTGCAGGAGGAGGAAGAAAAGTTTTGGAAAGAGTAA 1050 0.3695 MLLNYLKHKSSYQKQFPSFIKELCYQFSLEDLKISTNNFDNDRKIGESQYYIMYKGYLKHNGENDYPIALMRMRNLDGEWQFQKEIEFNCKLCHPNLTSFIGFCDEKDEKILVCRKDDIVNGSLNDLLLSRDMESLSWKKRLEICIGAAKGLHYLHTGAKRTIFHRDIKPHNILLDNSMVPKLWQLGFSLQGKLSNSKSIPIEVDLIYGTLGYLAPEYGAFGTFTDKCDVYSFGMVLLNVLCTNYNLTTMDKMRMFRLEEEIAFLEDHNEVLDENILRGDNFWDKFLDAEIIDPVLMRLIALPCLEVFMDIAKRCLKYDPNERPAMGEVEVELEHALAVQEEEEKFWKE 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00325 349 Coils Coil 255 275 - -
Trre13g00325 349 PANTHER OS07G0166700 PROTEIN 23 340 IPR045272 GO:0004714|GO:0006468
Trre13g00325 349 SMART serkin_6 39 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00325 349 Gene3D Transferase(Phosphotransferase) domain 1 119 348 - -
Trre13g00325 349 Pfam Protein kinase domain 41 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00325 349 ProSiteProfiles Protein kinase domain profile. 39 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00325 349 SUPERFAMILY Protein kinase-like (PK-like) 13 332 IPR011009 -
Trre13g00325 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Trre13g00325 349 Gene3D Phosphorylase Kinase; domain 1 3 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00325 Trre-Chr13 2500652 2502635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00325 10 345 Receptor kinase-like Gene Family AT5G39000 40.413 7.32e-58 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trre13g00325 Pkinase 1.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00325 - - mtr:25497582 382.874