LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre13g00323	ATGGCAAACTCTATAATAAAAAAAAATTACATGAAAATCAACCTACTATCTCTCATTTTCCTATTGTTCCCTCTACTTTCAAAGTCATACAACCCAGATTACAATTTAGCCATCAATTGTGGCTCCTCAAAAAACAACACTGGCCAAGATAGACGACCTTGGGTTGGTGATGATATTGATAACTCCAATCTCTTTACTTTCTTTGAACCAAAAACCACAGACCCATCTCTTATTACATTACCTAGTTCTTTTGCAAATGCAGAAATTCCATACAGAGCAGCGCGTGTCTCTCTCTCAAATTTTACATACTCTTTTCCTATCATCATCACTAGTTCCCCTGTTTTTCTTCGCCTTCATTTTTACCCAACTTCATATCAAAACTTTAAACCCTCAGACTCAGATGCACTTTTCTCTGTTACAGTAAATGACAACCTTACCCTTCTTAAAGACTTCAACCCTTTAAACTGGATTCTTGCTGAAGACGGAAAAATCACGAAAGAATATTGCATCCAAATCAAACCAAATGAGAATTTGCTAAACATAACATTCATTCCCAGCAAGAAAAACCAATCAAATGTTTCTTATGCTTTCATTAACGGAATCGAAGTTGTTTCTATGCCTTCTTATCTCTATTACACAAACCTGAGTGACTCAAGTTATCATTTGAAATCACTTGACCCATTTGACAATAACAACGCAGATTACCAAATTCAAAACAACACATCTTTGGAGATGCTTTACAGAGTCAACGTTGGTCAAAGGGAAGTTCCATCAAATGAAGATACAGGCATGTTTCGTCATTGGGAAACCGATTATCCTTACTTGAGGAAAATATATCCACAAAGTTTAACAAGTAGTTCTGAACATCTCATCTATTTAAAAGATAGCAGTCCAAATTACACCGCACCAGAAGGTGTATACCTAAGTGCAAGAAGTTATGGACGGGATGTGACAGAGGATTATAATGTAACTTGGAATTTTGAAGTTGATTCCACTTTTAATTATATGGTAAGGTTACATTTTTGTGAGTTTGAAGAGTCTGTCAAAGACGTAGGTTACAGAGTCTTTAAGATTTTTATAGATGATATTTCGGCTGAACAATATGCTGATGTATTTTCATGGAGTGGTGGTCTCTTAGTTCCTGTTCATAAGGATTATGCTGTGAAATTATTCTCTAACGAAGGAAGCTCTCAAATTGAAAGAGTTAATATTTCAATCAAGCTTCAACGCATGCCGGATAATAGCCTCACAAAATACCGTGATGTCCTATTGAATGGAATCGAGATTTTCAAGATAAGTGATAACAATAACAATCTTGCAGGAGTGAAACCCAAATATATATATTTATCTCCAACGGAACCATCATCACCTAGTCCAAAATCTAAGTCAAAGAACTCAACCGTAGTCATTTTTATTGCGGTTGGAGTTTCATGTCTTTTGCTAGCATTTGTTGCTACGGGAATAATAGTTTTTGTTAGAAGGAGAAAAGGATTTGAGCCTCATTTTCCAATGGAAGAGAGTTCATGGAAGACAAAGAAAGAAGGTTCGTCAACTTTACCATCCCATTTGTGTCGCTATTTTACAATAGCGGAGATAAAAGCTGCTACAAACAACTTTGATGATATTTTTATCATTGGGGTTGGTGGGTTTGGCAATGTATACAAAGGTTACATCGATGAAGGTACACCCGTTGCGATAAAACGTCTTAAACCTGGTTCTCAACAAGGTGTAAACGAGTTCATGAATGAGATCGACTTGCTCTCTCAACTTCGTCATATTCATCTTGTTTCCCTCATTGGATATTGCAACGAAGGTGCAGAGATGATTCTTGTTTATGACTTCATGCAACGTGGCACTCTTCGTGAATATTTATATGGTTCCGATAATGAACATCTTACCTGGAAGCAGAGACTCGAGATTCTATTAGGTGCGGCAAGAGGGTTGCATTATCTTCATACAGGTGCGAAGGACAATATCATACATCGTGATGTGAAGAGTACTAACATATTGTTAGATGAGAAATGGGTGGCTAAGGTTTCTGATTTCGGGTTATCAAAAGTGGGACCAACGGGAATGGCAATGACCCACGTCAGTACTGTGGTGAAGGGTAGTCTTGGGTATTTGGATCCAGAGTACTACCTCCGTCAAAGGTTGACTCTAAAGTCTGACGTGTACTCTTTCGGTGTGGTACTTCTTGAAGTGTTGTGTGCGAGACCACCTTTGGTTCGTTCTTTGGAGAAGAAAAAAGCGAGTTTGGTCGTTTGGTTCCAAAGATGTTACAAAGAAGGTCGGATAATTGAAGAACTTGTGGACCCGTTCATAAAGGACTCCATAACAGATGAGTGTTTGAAATGTTATTGTCAAATGGTGTTGAGTTGTTTGCATGATGATGGAAATCAAAGGATGTCGATGAGCGATGTGGTCGGAGCCTTAGAGTTTGCATTACAGTTGGTGATGAGTGAGGAGGATAGTAAGTTTGGTGAGACCAAAGAAAAAGAAAAAAGTGAGCAAAAACTACAGTTGCCTCAATTTACGAGCGAGGATGGCAGTGGTGTGTGTTTCACGAGTAGTAGCGATGACTATGGATCCCATGACAGTAAGGTAAGCACCATTTCAACCAGTACCGAAGAACAACCTATGTTATCTGCGACTGTGTTTTCGGAGATTGGGAATCCAAGAGCACGATAG	2688	0.3843	MANSIIKKNYMKINLLSLIFLLFPLLSKSYNPDYNLAINCGSSKNNTGQDRRPWVGDDIDNSNLFTFFEPKTTDPSLITLPSSFANAEIPYRAARVSLSNFTYSFPIIITSSPVFLRLHFYPTSYQNFKPSDSDALFSVTVNDNLTLLKDFNPLNWILAEDGKITKEYCIQIKPNENLLNITFIPSKKNQSNVSYAFINGIEVVSMPSYLYYTNLSDSSYHLKSLDPFDNNNADYQIQNNTSLEMLYRVNVGQREVPSNEDTGMFRHWETDYPYLRKIYPQSLTSSSEHLIYLKDSSPNYTAPEGVYLSARSYGRDVTEDYNVTWNFEVDSTFNYMVRLHFCEFEESVKDVGYRVFKIFIDDISAEQYADVFSWSGGLLVPVHKDYAVKLFSNEGSSQIERVNISIKLQRMPDNSLTKYRDVLLNGIEIFKISDNNNNLAGVKPKYIYLSPTEPSSPSPKSKSKNSTVVIFIAVGVSCLLLAFVATGIIVFVRRRKGFEPHFPMEESSWKTKKEGSSTLPSHLCRYFTIAEIKAATNNFDDIFIIGVGGFGNVYKGYIDEGTPVAIKRLKPGSQQGVNEFMNEIDLLSQLRHIHLVSLIGYCNEGAEMILVYDFMQRGTLREYLYGSDNEHLTWKQRLEILLGAARGLHYLHTGAKDNIIHRDVKSTNILLDEKWVAKVSDFGLSKVGPTGMAMTHVSTVVKGSLGYLDPEYYLRQRLTLKSDVYSFGVVLLEVLCARPPLVRSLEKKKASLVVWFQRCYKEGRIIEELVDPFIKDSITDECLKCYCQMVLSCLHDDGNQRMSMSDVVGALEFALQLVMSEEDSKFGETKEKEKSEQKLQLPQFTSEDGSGVCFTSSSDDYGSHDSKVSTISTSTEEQPMLSATVFSEIGNPRAR	895

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre13g00323	895	Gene3D	-	32	207	-	-
	Trre13g00323	895	Gene3D	-	241	433	-	-
	Trre13g00323	895	CDD	STKc_IRAK	545	812	-	-
	Trre13g00323	895	SMART	serkin_6	539	814	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre13g00323	895	PANTHER	OS03G0124300 PROTEIN-RELATED	15	512	IPR046957	GO:0004672
	Trre13g00323	895	ProSitePatterns	Protein kinases ATP-binding region signature.	545	567	IPR017441	GO:0005524
	Trre13g00323	895	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	659	671	IPR008271	GO:0004672\|GO:0006468
	Trre13g00323	895	FunFam	Receptor-like protein kinase FERONIA	615	835	-	-
	Trre13g00323	895	FunFam	FERONIA receptor-like kinase	35	207	-	-
	Trre13g00323	895	Pfam	Protein tyrosine and serine/threonine kinase	545	810	IPR001245	GO:0004672\|GO:0006468
	Trre13g00323	895	FunFam	receptor-like protein kinase FERONIA	504	614	-	-
	Trre13g00323	895	SUPERFAMILY	Protein kinase-like (PK-like)	515	813	IPR011009	-
	Trre13g00323	895	FunFam	FERONIA receptor-like kinase	241	433	-	-
	Trre13g00323	895	Gene3D	Phosphorylase Kinase; domain 1	503	614	-	-
	Trre13g00323	895	Gene3D	Transferase(Phosphotransferase) domain 1	615	838	-	-
	Trre13g00323	895	Pfam	Malectin-like domain	38	432	IPR024788	-
	Trre13g00323	895	ProSiteProfiles	Protein kinase domain profile.	539	814	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre13g00323	895	MobiDBLite	consensus disorder prediction	839	885	-	-
	Trre13g00323	895	MobiDBLite	consensus disorder prediction	826	895	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre13g00323	Trre-Chr13	2486679	2489366	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre13g00323	27	895	Receptor kinase-like Gene Family	AT3G51550	44.092	0.0	638

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Trre13g00323		Malectin_like	3.3e-34	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre13g00323	-		-	mtr:25497555	988.023