Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00320 ATGGCAAATTCCATAAACAAAAAATTTCACACTAAAATGACCTTACTATCTCTCATTTTGCTATTGTTCCCTCTAGTGGCAAACTCATACATCCCTGATTACAATTTAGCTATCAATTGTGGCTCCTCAATAAACACTACTTCCTTAGATAATCGTCTTTGGGTTGGTGATGATGATATTCATTACTCCAATCTATTTACCTTCACAGAACCAAAAACCACAAACAAATCTTTTAATACAAAGCCTAATTCCCTCTTAAATATTGAAATTCCATACACAGCCGCACAAAATCAAATTCGTAATGACAAAGCTCTAGAGATGGTTTATAGAGTCAACGTTGGTCTAAATCAAGTTCCACCAAGTGATGATACAGGTATGTTTCGTAATTGGGATAATGATTTTCCTCTTTACTTGGAGAAACCATATCCAGATAGTGTATCAAGCATTTTAGGTGAGGAACATCTGAACTATTTAAAAAACACCGTTCCAAATTACACTGCACCAGAAGCTGTATACTTTACTGCAAGAAGTTATGGAATGAATGTGACAGAGGATTATAATGTAACTTGGAATTTTGAGGTTGATTCTGCTTTTACTTATATGGTAAGGCTACATTTTTGTGAGTTTGATGAGCTTATCAAGAAAGAAGGTGATAGAGTCTTTCAAATTTTTATAGCTAACACTTTGGCTGAGGAAAATGCTGATGTGATGAAGTGGAGTAGTGGTGCTCGTTTGGTTCCTGTATATAAGGATTATGTTGTGACTATGTACTCTCCGGAAGGTAGCTCTCAAATTGAAAGAGTTAATCTTTCGATCAAGCTACAACGATTACCAAAATCTATGGTTACAACATATCGTGATGTAATTTTGAATGGAATAGAGATTCTCAAAATAAGTGATTACATCAGACCAAACCCAAAATCAATTGCTCCATTAATTCAAAGTATCCCTCTATCAAACCCGCATCAAGTATCTTCAACCCAATCATCAAAAAACTTTAAGACCTCCACAATTTTCCTAGTTGTGATTGCATCAGGTTTCGTGCTGGCAATTGTCGTAGGTATCATAGTTTCTAGGCTGATGAGAAGGTTGCACGATGCAGTGGAAGTTAACCTGTTGAAGAAAAAGAACAAATGCTCATCATCATTGCCTCCCCATTTATGTCGCTACTTTACAATCGCGGAGATTAGAGCAGCCACAAACAACTTTGATGATGTTTTCATCATCGGTGTTGGAGGGTTTGGCAACGTGTACAAAGGTTGCATAGATGGATCCACACTTGTTGCGATAAAACGCCTCAAATCAGGCTCTCAACAAGGTGCCAATGAATTCATGAACGAGATTGAGTTGCTCTCCCAGCTTCGCCATGTTCACTTGCATGGTACTCTCTGTGAGTATCTCTATGGTTCCAATAACCAGCCCTTACCATGGAAGCAGAGGCTTGAGATTCTATTGGGTGCAGCGAGAGGGTTGCATTATCTTCATGCTGAGGTGTTGTGTGCTAGGCCACCTTTGGTTCGCGATTTGGATAAGAACACAGCAAGTCTCGTTTGTTGGTTTCAAAAATGTTACAATGAAGGTGTGGCGATTGAGCAAATAGTAGATCCATTTCTAAGATATTCTATCACAGATGAGTGTTTGAAATCTTATTGCAAGTTGGCGTTGAGTTGTTTGCATGATGATGGAACTCAACGACCCACAATGAGTCAAGTGGTTGGGGATTTAGAGTTTGCGTTGCAATTGGTGGTTAGCGAAGAAGGTAGCCAGTTTAGTAAGGCCCAAAAAGAGGGAAGATATATGAAAGGACCACAATTCTCACAGTTTATAAGTGATGAAGAGAGTGATCTGCATTTCATTAGATCCCACACCTACAAGGAGAACACAGTCTCAGCATGGCCAAGTAGTCAAGAACATCCTTTCTCGGAGATTCGGAATCCAAGACCACGATCACATTCATGTCAAAACCTCAAAGTTTATATTTAG 1983 0.3878 MANSINKKFHTKMTLLSLILLLFPLVANSYIPDYNLAINCGSSINTTSLDNRLWVGDDDIHYSNLFTFTEPKTTNKSFNTKPNSLLNIEIPYTAAQNQIRNDKALEMVYRVNVGLNQVPPSDDTGMFRNWDNDFPLYLEKPYPDSVSSILGEEHLNYLKNTVPNYTAPEAVYFTARSYGMNVTEDYNVTWNFEVDSAFTYMVRLHFCEFDELIKKEGDRVFQIFIANTLAEENADVMKWSSGARLVPVYKDYVVTMYSPEGSSQIERVNLSIKLQRLPKSMVTTYRDVILNGIEILKISDYIRPNPKSIAPLIQSIPLSNPHQVSSTQSSKNFKTSTIFLVVIASGFVLAIVVGIIVSRLMRRLHDAVEVNLLKKKNKCSSSLPPHLCRYFTIAEIRAATNNFDDVFIIGVGGFGNVYKGCIDGSTLVAIKRLKSGSQQGANEFMNEIELLSQLRHVHLHGTLCEYLYGSNNQPLPWKQRLEILLGAARGLHYLHAEVLCARPPLVRDLDKNTASLVCWFQKCYNEGVAIEQIVDPFLRYSITDECLKSYCKLALSCLHDDGTQRPTMSQVVGDLEFALQLVVSEEGSQFSKAQKEGRYMKGPQFSQFISDEESDLHFIRSHTYKENTVSAWPSSQEHPFSEIRNPRPRSHSCQNLKVYI 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00320 660 ProSitePatterns Protein kinases ATP-binding region signature. 409 431 IPR017441 GO:0005524
Trre13g00320 660 Gene3D Transferase(Phosphotransferase) domain 1 463 497 - -
Trre13g00320 660 Gene3D - 103 299 - -
Trre13g00320 660 PANTHER OS03G0124300 PROTEIN-RELATED 14 93 IPR046957 GO:0004672
Trre13g00320 660 Gene3D Phosphorylase Kinase; domain 1 377 462 - -
Trre13g00320 660 SUPERFAMILY Protein kinase-like (PK-like) 379 577 IPR011009 -
Trre13g00320 660 Gene3D Transferase(Phosphotransferase) domain 1 498 581 - -
Trre13g00320 660 FunFam FERONIA receptor-like kinase 103 299 - -
Trre13g00320 660 Pfam Malectin-like domain 99 297 IPR024788 -
Trre13g00320 660 Pfam Protein tyrosine and serine/threonine kinase 409 459 IPR001245 GO:0004672|GO:0006468
Trre13g00320 660 FunFam receptor-like protein kinase FERONIA 367 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00320 Trre-Chr13 2467961 2470657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00320 497 586 Receptor kinase-like Gene Family AT3G51550 47.778 5.32e-19 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trre13g00320 Malectin_like 7.7e-25 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00320 - - mtr:25497555 558.91