Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00311 ATGAATAAGAATTCAAAAGAAGCTGAATTTCCATTGAAACAAGAAGTTCATCCTAATTCAAATGATCAACAAGAAAAGGAAAAAGCTTCACCATCATCAAGTTCCTTAGCTTCATCTTCACAATGGCCAAGATTGAAAGATCCAAGAATTGTTAGAGTATCAAGAGCCTTTGGTGGAAAAGATAGACATAGCAAAGTTTGCACAATAAGAGGATTAAGAGATAGGAGAGTTAGACTTTCAGTTCCAACAGCTATTCAACTTTATGATCTTCAAGATAGATTAGGGCTTAATCAACCTAGCAAAGTTGTTGATTGGTTACTTAATGCAGCTAAACAAGAAATTGATCAACTTCCACCACTTCCTAATTTTCCACCTATTGGAACAAATTTTAATTTTGGTTTTCCATCTTCTATTGAAGCCAACACCAACACTTCTCATCTTCATCAACAATTGTTGAATTTCAATAGGAACAATATTCAATGGGAAGGTTCAAGTTCAAGTCAAAATTCTAGTTGGAAATTAAACCCTAAAGAAGATTCAAGAGAAATGGTTAGTGAAAAACCAAATTATTGGATGAATAGAAGTACTCAAGAAGAGGAAAATAAAGAGCAAGGAAGCAATATTGAAGGAGGAAATATTGGTTTAATTACAAGCCAAACCAATGATGGTAATGCAATTACATCTTTGCCACCAATGTTGTCTTTATCAACTGGAAATTCTTCTCAAATGTTGTTAGGAACAACACAATCATATTTTTCTTCAAATGTTAATGAAATGGAGATGGATCTTCATCAAAGACAAATCAACAATCATTATCATCAAATGTTGAGTTCATCAAATTCTCAAAATCCAATGAATAATTCTCTTAACAATCCTTCCTTCAGTTTGGCTATGATGAGTACTCCCAAGTTTCTACAAAGGAGCAGTGAAAATACATCTAATAAAGAACAAGATTTCACTCCAAAGTGA 969 0.3282 MNKNSKEAEFPLKQEVHPNSNDQQEKEKASPSSSSLASSSQWPRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKQEIDQLPPLPNFPPIGTNFNFGFPSSIEANTNTSHLHQQLLNFNRNNIQWEGSSSSQNSSWKLNPKEDSREMVSEKPNYWMNRSTQEEENKEQGSNIEGGNIGLITSQTNDGNAITSLPPMLSLSTGNSSQMLLGTTQSYFSSNVNEMEMDLHQRQINNHYHQMLSSSNSQNPMNNSLNNPSFSLAMMSTPKFLQRSSENTSNKEQDFTPK 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00311 322 ProSiteProfiles TCP domain profile. 59 117 IPR017887 -
Trre13g00311 322 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 19 288 IPR005333 GO:0003700
Trre13g00311 322 MobiDBLite consensus disorder prediction 1 43 - -
Trre13g00311 322 Pfam TCP family transcription factor 59 203 IPR017887 -
Trre13g00311 322 MobiDBLite consensus disorder prediction 162 185 - -
Trre13g00311 322 MobiDBLite consensus disorder prediction 25 42 - -
Trre13g00311 322 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00311 Trre-Chr13 2401564 2402688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00311 22 131 TCP Transcription Factor Family AT3G02150 67.227 6.23e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre13g00311 TCP 2.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00311 - - gmx:100816424 286.96