Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00301 ATGTCTTCATCAATCAATGGTCGCAAACCAAGTGAAATTTACAAAGCACAAGCTTTATTATACAAACACATATATGCTTTCATAGATTCCATGTCTCTCAAATGGACAGTTGAAATGAACATACCAAACATTATCCACAATCATGGCAAACCAATTCCACTTTCAAACTTAGTTTCAATTCTTAAAGTTCCATCATCGAAATGCGGTAACGTACAACGTATCATGCGTTACCTCGCACACAACGGATTCTTCGAGATAATAACAAATCAAGAATTGGAAAATAATGAAGAATCTTATGCTCTAACTGTTGCTTCAGAGCTTCTTGTTAAAGGAAGTGAACTTTGTTTAGCTCCAATGGTTGAATGTGTTCTTGATCCAACTCTTTCTGGTTCATATCATGAGATGAAAAAGTGGATTTATGAGGAAGATCTTACACTCTTTGGTGTTACTTTAGGAGCTGGTTTTTGGGATTTTCTTGAAAAGAATCCTGGTTATAATAAATCATTTAATGAGGCTATGGCTAGTGATTCTAAAATGATAAATTTGGCATTGAGAGATTGTGATTTTGTGTTTGAAGGGTTGGAATCAATTGTTGATGTTGGTGGTGGAACTGGAACAACTGCTAAGATTATTTGTGAGAGATTTCCTAAGTTGAAATGTGTTGTGTTTGATAGGCCACAGGTTGTTGAAAATTTAGATGGAACCAACAATTTGACATATGTTGGTGGAGACATGTTCCAATTTATTCCTAATGGTGATGCTGTTCTTCTTAAGTGGATTTTACATAATTGGATTGATAAGGATTGCATAAGGATACTGAAAAAATGTAAAGAAGCTGTTACAAGTGATGGGAAAAAAGGAAAAGTGATTATCATAGATATGGTGATAAATGAAAAGAAAGATGAGAACCAAATTACTCAAGTAAAGCTTCTTATGGATGTAAACATGGCTTCTCTTAATGGAAAAGAGAGAAATGAGAATGAATGGAAGAAACTCTTCAAAGAAGCAGGATTCCAAGACTATAAGATATCTCCTTTGACTGGATTTTTGTCTCTTATTGAGATCTATCCTTAA 1074 0.3408 MSSSINGRKPSEIYKAQALLYKHIYAFIDSMSLKWTVEMNIPNIIHNHGKPIPLSNLVSILKVPSSKCGNVQRIMRYLAHNGFFEIITNQELENNEESYALTVASELLVKGSELCLAPMVECVLDPTLSGSYHEMKKWIYEEDLTLFGVTLGAGFWDFLEKNPGYNKSFNEAMASDSKMINLALRDCDFVFEGLESIVDVGGGTGTTAKIICERFPKLKCVVFDRPQVVENLDGTNNLTYVGGDMFQFIPNGDAVLLKWILHNWIDKDCIRILKKCKEAVTSDGKKGKVIIIDMVINEKKDENQITQVKLLMDVNMASLNGKERNENEWKKLFKEAGFQDYKISPLTGFLSLIEIYP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00301 357 Gene3D - 1 108 IPR036388 -
Trre13g00301 357 PIRSF O-mtase 1 357 IPR016461 GO:0008168
Trre13g00301 357 FunFam Coniferyl alcohol 9-O-methyltransferase 3 108 - -
Trre13g00301 357 Pfam O-methyltransferase domain 132 339 IPR001077 GO:0008171
Trre13g00301 357 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 355 IPR029063 -
Trre13g00301 357 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 357 IPR016461 GO:0008168
Trre13g00301 357 CDD AdoMet_MTases 197 292 - -
Trre13g00301 357 Gene3D Vaccinia Virus protein VP39 109 357 IPR029063 -
Trre13g00301 357 PANTHER O-METHYLTRANSFERASE 16 342 IPR016461 GO:0008168
Trre13g00301 357 Pfam Dimerisation domain 31 79 IPR012967 GO:0046983
Trre13g00301 357 SUPERFAMILY "Winged helix" DNA-binding domain 10 112 IPR036390 -
Trre13g00301 357 FunFam O-methyltransferase ZRP4 110 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00301 Trre-Chr13 2355439 2358535 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00301 10 355 Monolignol Biosynthesis Gene Families AT5G54160 30.618 5.30e-48 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00301 K22588 K13262 ag:AAC49926 636.721