Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre13g00300 | ATGGCATCATCAATCAATAACCGCAAACCAAGTGAAATTTTCAAAGCACAAGCACAATTATACAAACACATGTATGCCCACATAGATTCTATGTCTCTTAAATGGTCAATTGAAATGAACATACCAAATATAATCCATGATCATGGCAAACCAATTTCTCTTTCAAACTTAGTTTCCATTCTTCAAATTCCATCATCGAAAATCGATAACGTGCAACGTCTCATGCGTTACCTCGCGCACAACGGATTCTTCGAGATAATAAAGAATCAAGAATTGGAAAATGATGAAGAAGAAGAAGCTTATGCTCTCACTGTTGTTTCAGAGCTTCTTGTTAAAGGAAGTGAATTTTGTTTAGCTCCAATGGTTGAGTGTGCTCTTAATCCAACATTTTCATCTTCATTTCATAAGTTCAAGAAATGGATCTATGAAGAAGATCTTACACTCTTTGCAGTTAATTTAGGATCTGATTTTTGGGAGTTTCTTAATGAAAATCCTGAATATAATACAATGTTTAATGATGCAATGGCTAGTGATTCCAAAATGATAAATTTGGCATTGAAAGATTGTGATTTTGTGTTTGAAGGGTTGGAATCAATTGTTGATGTTGGTGGTGGAAATGGAACAACAGCTAAGATTATTTGTGAGAAATTTCCTAAGTTGAAATGTGTTGTGTTTGATAGGCCAAAGGTTGTTGAGAATTTATCAGAAAGTGATAATTTGACTTATGTTGGTGGGGATATGTTCACATATGTTCCTAAAGCAGATGCAGTTCTGCTTAAGTGGATTTTACATGATTGGACTGATAAGGATTGTATAAGGATACTGAAAAAATGTAAAGAAGCTGTTACAAGTGATAGAAAAAGAGGAAAAGTGATTGTGATAGATATGGTGATAAATGAAAAGAAAGAAGATAACCAACTTACTGAAATAAAGCTCCTTATGAATGTATCAATTTCATGTCTTAATGGAAAAGAGAGAACTGAGAAAGAATGGAAGAAACTCTTCATAGAAGCAGGTTTTCAAGACTACAAAATCTCTCCTTGTACTGAATTACTGTCTCTAATTGAGATCTTTCCTTAA | 1080 | 0.3343 | MASSINNRKPSEIFKAQAQLYKHMYAHIDSMSLKWSIEMNIPNIIHDHGKPISLSNLVSILQIPSSKIDNVQRLMRYLAHNGFFEIIKNQELENDEEEEAYALTVVSELLVKGSEFCLAPMVECALNPTFSSSFHKFKKWIYEEDLTLFAVNLGSDFWEFLNENPEYNTMFNDAMASDSKMINLALKDCDFVFEGLESIVDVGGGNGTTAKIICEKFPKLKCVVFDRPKVVENLSESDNLTYVGGDMFTYVPKADAVLLKWILHDWTDKDCIRILKKCKEAVTSDRKRGKVIVIDMVINEKKEDNQLTEIKLLMNVSISCLNGKERTEKEWKKLFIEAGFQDYKISPCTELLSLIEIFP | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre13g00300 | 359 | Gene3D | Vaccinia Virus protein VP39 | 111 | 359 | IPR029063 | - | |
| Trre13g00300 | 359 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 21 | 359 | IPR016461 | GO:0008168 | |
| Trre13g00300 | 359 | Gene3D | - | 1 | 110 | IPR036388 | - | |
| Trre13g00300 | 359 | Pfam | O-methyltransferase domain | 135 | 341 | IPR001077 | GO:0008171 | |
| Trre13g00300 | 359 | SUPERFAMILY | "Winged helix" DNA-binding domain | 10 | 114 | IPR036390 | - | |
| Trre13g00300 | 359 | PANTHER | O-METHYLTRANSFERASE | 14 | 344 | IPR016461 | GO:0008168 | |
| Trre13g00300 | 359 | Pfam | Dimerisation domain | 31 | 79 | IPR012967 | GO:0046983 | |
| Trre13g00300 | 359 | PIRSF | O-mtase | 1 | 359 | IPR016461 | GO:0008168 | |
| Trre13g00300 | 359 | FunFam | O-methyltransferase ZRP4 | 112 | 359 | - | - | |
| Trre13g00300 | 359 | FunFam | Coniferyl alcohol 9-O-methyltransferase | 3 | 110 | - | - | |
| Trre13g00300 | 359 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 116 | 356 | IPR029063 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre13g00300 | Trre-Chr13 | 2352623 | 2354291 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre13g00300 | 10 | 358 | Monolignol Biosynthesis Gene Families | AT5G54160 | 31.579 | 1.42e-50 | 171 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre13g00300 | K22588 | K13262 | ag:AAC49926 | 587.415 |