Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00296 ATGGCTTATCCAAAAAACCACATCAAAATCCATGAACAATGCAAAGTTTCTCCTCATGATTCTTCAACCCAATTATCTCTCCCTCTCACTTTCTTCGATTTGATGTGGCTAAGATTCCATCCAGTAGAACGCATCTTCTTCTACACCCTCCCAAATTCACAATCACACCCTACTTTCTTCTTCCAAAATCTTGTTCCAAAACTCAAATCTTCACTCTCTTTAACCCTCCAACACTTCCTCCCTTTAGCCGGTAATATTGTTTGGCCTTCCGATTCTCCAAAACCATTCATCGAATTCAATCCAAACGATGGTGGAGTTTCTTTGCTCTTAGCTCAGTGTGATGATGATGATATAGACTTCAATAAAATCTTGGAGCACAATTCGTCTCATGAAGCTTCTTTGTCTCGTTCTTTTGTACCGGACTTAGAATCAACCGATTCTTTTGCTTCTATTATCTCAATTCAAGTAACTCTTTTTCCAAAAAGTGGTTTTTCCATCGGAATAAGCACACACCATGCTGTTCTTGATGGAAAATCTTCAACCATGTTCATCAAAGCTTGGGCTTCTATATGTAAATCTCTTGAAGAAACACAATCACCAAATTTGGAAACTTTTTTAGAACCCTTTTTGGAAAGGGAAGTAATCAAGGATCCAAATGATTTTGAGAATGTGTTCATAAATAGTTGGAACAAAATCTCATCACATCTTGATAAGAGCAATTTGAGAAGCATAAAGATTATGTCAAACATGTTTCAACCGAAAACTAAGGATTCCATTCGCGCTACGTTCGAGCTCACACGTGCGGATTTGGAGAAATTAAACAAAAGGGTATTGTCCAAATGGAACAATATTGTAGAAGGAGGAGCACAAGAACAAGAACAAGAGCATCCTAAGAAATTATCAAGTTTTGTTCTTACATGTGCTTATGTATCTGTTTCCATAGCTAAAGCGATACAACAATCCGAAAGTGATAAAAAACAGAAATTTTGTTTAGGTTTTCCAGTGGATTACAGGGCTAGATTAGATCCTCCAATTCATGAAAACTATTTTGGAAATTGTGTTTGTAATCATGTAGTTGATACCGAGCCAGAGGATTTTACAAAAGAAGATGCATTGGTGATTGTTGCTAAGAAAATTTATGGTAAGATTAACAAAATGGATAAGGGTGTTCCTGAAGGAGCTAAGACATTGATGTTTAGATACATGGCTATGATTGAAGAAGGAATTAAACCAATGGGAGTTGCTGGATCAACAAGGTTTGGAGTATATGAGATTGATTTTGGTTTTGGAAGGCCTGAAAAAGTTGAGATTACTTCAATTGATAGAGGATATTTAACAATTGGATTAACAGAAAGTAAGGATTTGAAAGGTGGTGTTGAAGTTGGACTTGTTCTTGATAAACATGTGATGGATTTGTTTCATACCATTTTTCATCAAGGTATATGCTTTGATTCATGA 1458 0.3601 MAYPKNHIKIHEQCKVSPHDSSTQLSLPLTFFDLMWLRFHPVERIFFYTLPNSQSHPTFFFQNLVPKLKSSLSLTLQHFLPLAGNIVWPSDSPKPFIEFNPNDGGVSLLLAQCDDDDIDFNKILEHNSSHEASLSRSFVPDLESTDSFASIISIQVTLFPKSGFSIGISTHHAVLDGKSSTMFIKAWASICKSLEETQSPNLETFLEPFLEREVIKDPNDFENVFINSWNKISSHLDKSNLRSIKIMSNMFQPKTKDSIRATFELTRADLEKLNKRVLSKWNNIVEGGAQEQEQEHPKKLSSFVLTCAYVSVSIAKAIQQSESDKKQKFCLGFPVDYRARLDPPIHENYFGNCVCNHVVDTEPEDFTKEDALVIVAKKIYGKINKMDKGVPEGAKTLMFRYMAMIEEGIKPMGVAGSTRFGVYEIDFGFGRPEKVEITSIDRGYLTIGLTESKDLKGGVEVGLVLDKHVMDLFHTIFHQGICFDS 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00296 485 Pfam Transferase family 7 475 - -
Trre13g00296 485 PANTHER - 8 481 - -
Trre13g00296 485 Gene3D - 255 483 IPR023213 -
Trre13g00296 485 Gene3D - 7 242 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00296 Trre-Chr13 2341400 2342857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00296 8 473 Monolignol Biosynthesis Gene Families AT5G48930 24.059 1.79e-21 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00296 - - tpra:123889238 577.015