Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00295 ATGGCTTTGCAAACAGCTACTCCTCCAACTACTCCCAGTGCCGAAATGGTTGGTAATGCATTTGTTGAGCAGTATTATCATATTCTTCACCAATCTCCAGAATTGGTCTATCGGTTTTATCAGGAGTGTAGTGTCATTAGCCGGCCTGATTCCAATGGTGTGATGACGTCAGCCACAACTATGAAAGGCATCAACGAGAAAATTCTTTCACTGAATTTCAAGGAATTTAAAGCAGAAATAAAGACCGCTGATGCTCAAAAATCGCACAAGGAAGGAGTTACTGTGCTGGTGACTGGATGCTTGACTGGAAAGGATAACTTGAGAAGAAAATTCGCACAGTCATTCTTCCTCGCTCCACAAGATAACGGCTTTTTTGTTCTGAATGATGTTTTTAGGTATGTAGAAGACCGTGAACATTTGGAACCACATCCGGTTAATGGAGTCGATGACGCAATTGCTGTTACTGTAACCTCAGAACCAGAACCAATTCACATTTCTGATCCTTCTCCACCAGACCCTGCAAATTCGCACCTGAAAGATCGCCAAATTGTTGCTGAGAATGCTTATGAGCCTTCTAACCATCACGAGACACAGATAGTTGCTGAAAATGAAAACATCGTGGAACCTGATTTTCAGTCAAATGAGAATGATGATTCTCAGGCAGCTGAAATCACTTCATCTCAAGAGGATGCTCCAAAGAAATCTTATGCATCAATTGTTAAAGTTCCAAAAGGGAAATTGGCATCGGCTAAAGTGTATGTGCCGACTAATACTGTAAAGAAGGCGGCTAACAGAACTGAGAGCCAAATCGTTGAGTCGGTAGTGTCTGCGGCAGTGCCTGAAGCAGCTCCGGATAGTATTGGCAACCCTGAAAGTAATGATAGTAACGAGGAAGTCGAGGGACACTCTATCTACATTCGAAATTTGCCCTTAAATGTGACAGTTGCTCAGCTGGAAACTGAGTTTAAGAAATTTGGACCAATCAAGCCGGGAGGCATCCAAGTCAGAAATAATAAGCAGCAGGGATACTGCTTTGGCTTTGTTGAATACTTATCACTAAATTCAATGAATAATGCAGTTCAGGCTTCACCTATTGCTATTGGGGGACGTCAAGCTGTAATCGAAGTAAAGAGAACCACCGCCCGAGTTGGAAGTGGTGCAGGCGGCGGTATTGGGAGAGCTAGGACTCCATCAGGAAGACCTGGATTCCGAAATGATTCATTCAGGGGTCGTGGAAATTTCGGTGGTGGTCGAGGCTATGGTCGAAACAACGACCACGGAAACCGAGGCGAGTTTTCAATTAGAGGCCGCGGTCCCGGTGGACATGGAGAAAGTTATCACCAAGGAAGAGGGAGAGGCGGTGGCCGGTCTAATGCATTTAAACAAAGTGCTGTCGCTTCCGAATGA 1407 0.4463 MALQTATPPTTPSAEMVGNAFVEQYYHILHQSPELVYRFYQECSVISRPDSNGVMTSATTMKGINEKILSLNFKEFKAEIKTADAQKSHKEGVTVLVTGCLTGKDNLRRKFAQSFFLAPQDNGFFVLNDVFRYVEDREHLEPHPVNGVDDAIAVTVTSEPEPIHISDPSPPDPANSHLKDRQIVAENAYEPSNHHETQIVAENENIVEPDFQSNENDDSQAAEITSSQEDAPKKSYASIVKVPKGKLASAKVYVPTNTVKKAANRTESQIVESVVSAAVPEAAPDSIGNPESNDSNEEVEGHSIYIRNLPLNVTVAQLETEFKKFGPIKPGGIQVRNNKQQGYCFGFVEYLSLNSMNNAVQASPIAIGGRQAVIEVKRTTARVGSGAGGGIGRARTPSGRPGFRNDSFRGRGNFGGGRGYGRNNDHGNRGEFSIRGRGPGGHGESYHQGRGRGGGRSNAFKQSAVASE 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00295 468 MobiDBLite consensus disorder prediction 210 236 - -
Trre13g00295 468 ProSiteProfiles Nuclear transport factor 2 domain profile. 17 133 IPR018222 -
Trre13g00295 468 MobiDBLite consensus disorder prediction 383 468 - -
Trre13g00295 468 SMART rrm1_1 303 375 IPR000504 GO:0003723
Trre13g00295 468 Gene3D - 6 140 - -
Trre13g00295 468 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 379 IPR000504 GO:0003723
Trre13g00295 468 SUPERFAMILY RNA-binding domain, RBD 288 385 IPR035979 GO:0003676
Trre13g00295 468 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 362 IPR000504 GO:0003723
Trre13g00295 468 Gene3D - 261 395 IPR012677 -
Trre13g00295 468 FunFam Ras GTPase-activating protein-binding protein 1 290 423 - -
Trre13g00295 468 FunFam Nuclear transport factor 2 family protein 8 138 - -
Trre13g00295 468 SUPERFAMILY NTF2-like 13 134 IPR032710 -
Trre13g00295 468 Pfam Nuclear transport factor 2 (NTF2) domain 17 133 IPR002075 -
Trre13g00295 468 MobiDBLite consensus disorder prediction 210 233 - -
Trre13g00295 468 CDD RRM_SF 304 362 - -
Trre13g00295 468 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 13 448 IPR039539 -
Trre13g00295 468 CDD NTF2 13 135 IPR018222 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00295 Trre-Chr13 2332646 2335733 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00295 K24983 - gmx:100805494 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00295 13 2332646 2335733 Trre13g00295 13 2332646 2335733 ECH