Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00293 ATGGCCGTTGTTGAAGATAAAAACCATTCTCATGATCAAATTTCAACAACATCGTCAATCCCAATGAACAACGATTACACTAGAGAAAGAGATCTCTTCAACAAGTTTTTAGCGACGGAGAATCAAAGTCTCCGTCGCGGTCATGCACCGTTACCAACGGTGAAACCAGTTCATCAGCAACGACAGACATCTGTTGTTGCTGATGAACTCGATGACGATGAAGACTTGGAACTAAGTCTTGGTCTTTCAATGAATGGTCGATTTGGGTTTGACCCAAATGCCAAAAAGATCAAAAGAACAACTTCCATACCGGAATTCATGATTCCGGTATCCGGTGGTGGTGGTGGTGGTGGTGGTTCTGCTAGTGGTTCTGGTGGTTCTGAGGGTGGAAATTTGATAAGAACATGTTCGTTACCTGCTGAGAGTGAAGAAGAATGGAGAAAAAGGAAGGAATTGCAAACACAAAGGAGAATGGAAGCTAGAAGAAAAAGAAATGAGAAACAAAGGAATTTGAGGGCTTTGAGAGAAAGGAGCAATTTTGGTGGTGGTTGTAGTGGTGGAGAAGGGGGTGTTGGAATTGAAAGTGGGGGTGTGAATAGTAATAATTTAGGTGATGGTTTGATAAGAACGACGTCGTTGGCTAGTCGTGTTGGTGGACTTGGTTTGAATGGTGGTGGTGGTGATAAAGAAAAGGATCAAGTTTTGCCTCCAACACCATGTGGTGGTGGTTCAATTGGTTCATCTTCTGCAACTTCAGATTCTGAAGGTCAACAACATGGTCAAGGAACAGCACCGATGGATACTGAAAACTCGAGCAAGATTGCTGGACCTCAAAACAAACCCAAGGACTTAAGAAACTTGTTTGAAGATATGCCAAGTGTATCTACCAAAGGAGAAGGCCCTAATGGAAAAAGAATTGAAGGTTTTCTTTACAAGTATGGGAAAGGTGAGCAAGTGAGAATTTTGTGTGTTTGCCATGGAAGTTTTCTTACCCCTGCTGAATTTGTCAAGCATGCTGGTGGTGGTGATGTGGCCAATCCATTGAAGCATATTGTTGTTAGTTCAAGCTTAAATTGA 1077 0.4234 MAVVEDKNHSHDQISTTSSIPMNNDYTRERDLFNKFLATENQSLRRGHAPLPTVKPVHQQRQTSVVADELDDDEDLELSLGLSMNGRFGFDPNAKKIKRTTSIPEFMIPVSGGGGGGGGSASGSGGSEGGNLIRTCSLPAESEEEWRKRKELQTQRRMEARRKRNEKQRNLRALRERSNFGGGCSGGEGGVGIESGGVNSNNLGDGLIRTTSLASRVGGLGLNGGGGDKEKDQVLPPTPCGGGSIGSSSATSDSEGQQHGQGTAPMDTENSSKIAGPQNKPKDLRNLFEDMPSVSTKGEGPNGKRIEGFLYKYGKGEQVRILCVCHGSFLTPAEFVKHAGGGDVANPLKHIVVSSSLN 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00293 358 Pfam Putative nuclear localisation signal 132 173 IPR032310 -
Trre13g00293 358 Pfam Tify domain binding domain 319 354 IPR032308 -
Trre13g00293 358 MobiDBLite consensus disorder prediction 1 26 - -
Trre13g00293 358 PANTHER AFP HOMOLOG 2 30 355 IPR031307 GO:0007165
Trre13g00293 358 MobiDBLite consensus disorder prediction 242 277 - -
Trre13g00293 358 Coils Coil 150 177 - -
Trre13g00293 358 MobiDBLite consensus disorder prediction 145 174 - -
Trre13g00293 358 MobiDBLite consensus disorder prediction 221 285 - -
Trre13g00293 358 MobiDBLite consensus disorder prediction 145 186 - -
Trre13g00293 358 Pfam Ethylene-responsive binding factor-associated repression 71 105 IPR012463 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00293 Trre-Chr13 2319267 2323113 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00293 - - mtr:25497520 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00293 13 2319267 2323113 Trre13g00293 13 2319267 2323113 ECH