Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00291 ATGGAACAAAGAAAAATTATCTTTGTTCATGTAGTGATTTTTTTGGTCATGGTCCTACTTAGAGGAAGTACTAATGTTGTTGAAGCAAAAGGAGGGGGTGAAGAAGAAGATAGGATTTTGAAGCTTCCTGGTCAACCTAAGGTTTTGTTTAATCAATTTTCTGGCTATGTTACTGTTAATCATGAAGCTGGTAGAGCTCTCTTTTATTGGTTAACTGAAGCTCAACAAAATTCTCTCAACAAACCACTTGTCATTTGGCTTAATGGAGGTCCAGGTTGTTCATCAGTGGCATATGGAGCATCTGAAGAGATTGGCCCATTTAGATTAAACAAAACAACTTCTGGGCTTTACATTAACAAGTTTGCATGGAACACAGTGGCCAATCTTTTATTCTTGGAAGCTCCGGCTGGCGTCGGTTTCTCCTACACCAACCGCTCTTCCGACCTCCTTGACAGTGGCGACCGCCGCACTGCCAAGGACTCTCTGGAATTTGTAATCCAGTGGCTTGAAAGATTCCCACGTTACAAGAATAGGGAACTTTATATAACAGGAGAGAGCTATGCAGGACACTATGTCCCTCAATTAGCTAAGGAAATCATGACATATAACATAAAAGCCAAGCAACCTATCAATCTCAAGGGTATAATGGTTGGAAATGCAGTGACAGACAACTATTATGATAACTTGGGTACAGTGACATACTGGTGGAGCCATGCAATGATATCTGATCAAACATACAAACAACTTATTAGCACTTGTGATTTTCATCACCAGAAAGAATCTGATGAATGTGAATCTTTATATAGCTATGCCATGGATCAAGAATTTGGCAACATTGATCAGTACAATATCTATGCGCCTCCATGTAACCATTCCGATGGTAGCTCGTCCGGTACCCGCCACTCCATTCGGTTGCCCCACCTTCCTCATTTGGCATTTAGAAAAATGGCTGGTTATGATCCATGTACAGAAAAATATGCAGAGGTTTATTACAATAGGCCTGATGTTCAGAAAGCACTTCATGCTAACACAACTGGCATTCCTTATAAGTGGACTGCTTGCAGTGAAATTTTGAATAGAAATTGGAATGATACAGATGTATCTATTCTTCCAATTTATAGAGAATTGATAGCTCATGGAGTAAGAGTTTGGGTTTTCAGTGGGGATGTAGACTCAGTGGTTCCAGTAACAGCAACAAGATATTCACTTGCACAACTTAAGTTGGCAACAAAAATACCTTGGTATCCTTGGTATGTCAAAAATCAGGTTGGAGGTTGGACAGAAGTGTATGAAGGGCTAACATTTGCCACAGTGAGAGGGGCAGGTCATGAAGTGCCACTATTCAAACCAAGAGCAGCCCTTCAATTGTTCAAATCATTCCTTGCAGGAAAGCCTCTTCCAAAAGTGCAAAAATAG 1416 0.4054 MEQRKIIFVHVVIFLVMVLLRGSTNVVEAKGGGEEEDRILKLPGQPKVLFNQFSGYVTVNHEAGRALFYWLTEAQQNSLNKPLVIWLNGGPGCSSVAYGASEEIGPFRLNKTTSGLYINKFAWNTVANLLFLEAPAGVGFSYTNRSSDLLDSGDRRTAKDSLEFVIQWLERFPRYKNRELYITGESYAGHYVPQLAKEIMTYNIKAKQPINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDQTYKQLISTCDFHHQKESDECESLYSYAMDQEFGNIDQYNIYAPPCNHSDGSSSGTRHSIRLPHLPHLAFRKMAGYDPCTEKYAEVYYNRPDVQKALHANTTGIPYKWTACSEILNRNWNDTDVSILPIYRELIAHGVRVWVFSGDVDSVVPVTATRYSLAQLKLATKIPWYPWYVKNQVGGWTEVYEGLTFATVRGAGHEVPLFKPRAALQLFKSFLAGKPLPKVQK 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00291 471 FunFam Carboxypeptidase 318 466 - -
Trre13g00291 471 SUPERFAMILY alpha/beta-Hydrolases 36 467 IPR029058 -
Trre13g00291 471 Pfam Serine carboxypeptidase 46 462 IPR001563 GO:0004185|GO:0006508
Trre13g00291 471 Gene3D - 369 463 - -
Trre13g00291 471 Gene3D alpha/beta hydrolase 33 291 IPR029058 -
Trre13g00291 471 FunFam Carboxypeptidase 369 463 - -
Trre13g00291 471 FunFam Carboxypeptidase 33 291 - -
Trre13g00291 471 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 40 450 IPR001563 GO:0004185|GO:0006508
Trre13g00291 471 ProSitePatterns Serine carboxypeptidases, serine active site. 182 189 IPR018202 GO:0004185
Trre13g00291 471 ProSitePatterns Serine carboxypeptidases, histidine active site. 433 450 IPR033124 GO:0004185
Trre13g00291 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 193 IPR001563 GO:0004185|GO:0006508
Trre13g00291 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 433 446 IPR001563 GO:0004185|GO:0006508
Trre13g00291 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 132 142 IPR001563 GO:0004185|GO:0006508
Trre13g00291 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 119 131 IPR001563 GO:0004185|GO:0006508
Trre13g00291 471 Gene3D - 322 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00291 Trre-Chr13 2289182 2297764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00291 327 466 Calmodulin-binding Proteins AT2G22960 31.206 2.98e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00291 K16297 - gmx:100807680 847.04