Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00290 ATGGCTGTAGAGGAATCTGAGCAAGTGATTCCTGATTTAGAAAGAGAGGATAATTTAATTGCTGCAGCAAGGCATATTGTGATGGCTTTAGGGTCTAAGAAGAATCTTAGTAGTGATGAAAAGAAGATTCTTTCTGATCTTGGATCACAGTTGTCTTCGATGAACATACAAAGTGAGAAGGAGGAAGGGAAGATAGGGAAAAGGGATGATGATATTGATGTGGAGGACGACGTGGATGAGGAGGAGGAAGAGGGTGTTGGTGTTATTGAAGAACGGATTGGTTTGATTCAGGAGAAAATAATGAAATGGGAGGAAGATCAATCGATGATTTGGGATTTGGGACCTGAAGAAGCGTCCGAGTATTTGAATGCGGCTAATGATGCGCGCATATTGATCGAGAAGTTGGAGAGTATGCATTTGAGTAAAGAGGATCAAGAGTATAAGTTTTTGCAAAGGGCTTATAGTGTTCTTCAGACGGCTATGACACGGCTTGAAGAAGAGTTTAGCAACTTGCTTATCCAGAATAGGCAACCTTTTGAACCGGAGTATGTATCCTTTCGATCGACCGAGGAAGATGCTGTAGATGGAAATTCTTTTGTCTCTTTAGGTGATGAATCATTTGAGGAATCACTTCGAAGAGATAGTGTTAGCCGAGCCTCTGAGGAACATGTCATCGATTTAGTGCATCCGGCCGTGATTCCCGATCTCAGGTGTATTGCAAACTTGCTTTTCGCTTCGAATTATGCTCAAGAATGTGCACAAGCTTATACCATTGTTAGAAGGGATGCTTTAGACGAGTGTTTGTTCATTCTTGAAATGGAAAGGCTAAGTATTGAAGATGTTTTGAAAATGGAGTGGGGCACTTTGAGTTCAAAGATCAAAAGATGGATTTGGGCTGTGAAAATCTTTGTTAGGGTTTATCTTGCAAGTGAAAGGTGGCTCAGTGACCAAATATTCGGAGAAGGTGAGCCTGTTAGTCAAGTTTCTTTTGTCGATGCATCAAAAGCTTCAATTTTGCAGCTTCTGAATTTCGGTGAAGCTATGTCTATTGGTCCTCACCAACCCGAGAAGTTGTTTCGAATTCTCGACATGTATGAAGTTCTCTCAGACCTAATGCCGGACATTGATGCTTTGTATCCGGACGAGGTTGGTTCCTCGGTTAAATTTGAATGCCATGAGGTTCTGACAAGATTGGGAGATTGTGTGAGGATAACATTTCTTGAATTCAAAAACACTGTTGGTTCGAATCCGTCAATAACACCTCTAGTTGGTGGAGGGATACATCCTTTGGCTAGGTATGTTATGAATTATCTTAGAACTCTTACCGATTACGGCGAAGCGCTGAATCATCTTCTGAAAGACCAAGAAGAAGAAGATTCCATTTCATCGTCACCTGACACGAGTCCAGGTACCGAAGAAGATAACAGAAGCCAAGGATCTCCCGGTAGATTTCCCTCAATGTCGCGGCAATTCCTATCATTTGCTTCAGTCTTGGAAAACAATCTTGAGGAGAAATCGAAATTATACAAAGAAACTTCATTGCAGCATTTGTTCTTAATGAACAACCTACATTACATGGCTGAAAAGGTTAAAGGGTCTGAACTTAGGGGCATATTCGGAGACGAATGGATTCGAAAACACAACTGGACGTTTCAGCAGCACGCAATGAAATACGAGAGAGCCAGTTGGAGTTCAATTCTCAACTTGCTTAAGGACGAAGGAATTCATGCTCCCGGTTCAAATTCTGTCTCGAAAACTCTTCTGAAGGAAAAGCTACGAAGCTTCTACCTCGGCTTCGAGGATATTTACAGGATTCAAACGGCTTGGTCGATTCCAGATGTTCAGCTTCGCGAAGATTTGCGGATTTCTATATCAGTTAAAGTGATTCAAGCTTATAGGACATTTGTTGGAAGGAATAATAGTCATATGAGTGACAAAAATATTAGATACACTGCTGATGATTTAGAAAATTATCTTTTGGATTTCTTTGAAGGTTCTCAAAAGTTGTTGCAAAATCCTCATAGGAGGTGA 2031 0.4101 MAVEESEQVIPDLEREDNLIAAARHIVMALGSKKNLSSDEKKILSDLGSQLSSMNIQSEKEEGKIGKRDDDIDVEDDVDEEEEEGVGVIEERIGLIQEKIMKWEEDQSMIWDLGPEEASEYLNAANDARILIEKLESMHLSKEDQEYKFLQRAYSVLQTAMTRLEEEFSNLLIQNRQPFEPEYVSFRSTEEDAVDGNSFVSLGDESFEESLRRDSVSRASEEHVIDLVHPAVIPDLRCIANLLFASNYAQECAQAYTIVRRDALDECLFILEMERLSIEDVLKMEWGTLSSKIKRWIWAVKIFVRVYLASERWLSDQIFGEGEPVSQVSFVDASKASILQLLNFGEAMSIGPHQPEKLFRILDMYEVLSDLMPDIDALYPDEVGSSVKFECHEVLTRLGDCVRITFLEFKNTVGSNPSITPLVGGGIHPLARYVMNYLRTLTDYGEALNHLLKDQEEEDSISSSPDTSPGTEEDNRSQGSPGRFPSMSRQFLSFASVLENNLEEKSKLYKETSLQHLFLMNNLHYMAEKVKGSELRGIFGDEWIRKHNWTFQQHAMKYERASWSSILNLLKDEGIHAPGSNSVSKTLLKEKLRSFYLGFEDIYRIQTAWSIPDVQLREDLRISISVKVIQAYRTFVGRNNSHMSDKNIRYTADDLENYLLDFFEGSQKLLQNPHRR 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00290 676 SUPERFAMILY Cullin repeat-like 106 664 IPR016159 -
Trre13g00290 676 Gene3D Exocyst complex component Exo70 100 671 - -
Trre13g00290 676 Coils Coil 147 167 - -
Trre13g00290 676 PANTHER EXOCYST COMPLEX PROTEIN EXO70 87 665 IPR004140 GO:0000145|GO:0006887
Trre13g00290 676 MobiDBLite consensus disorder prediction 462 484 - -
Trre13g00290 676 Coils Coil 674 676 - -
Trre13g00290 676 MobiDBLite consensus disorder prediction 455 484 - -
Trre13g00290 676 Pfam Exo70 exocyst complex subunit 294 660 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00290 Trre-Chr13 2281295 2283325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00290 12 676 EXO70 exocyst subunit family AT3G29400 47.935 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00290 K07195 - gmx:100799102 1089.33