Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00289 ATGTCCACTCCTTCGGTATTTCAAGCAATTAGATCCATGTCATCGGCAAAGCTTTTTGTTGGAGGTGTTTCATATAACACTGATGATATGAGTCTCCGAGAACATTTTGCTCGCTACGGTGAAGTTCTTGAGGCAAAGATTATCATGGATCGTGACACTGGCAGGTCCCGAGGTTTTGGTTTCATAACTTTTGCAACGGCCGAGGAGGCATCTGCTGCCCTTCAGGCTATGGATAACCAGGATCTTCATGGTCGAACGATAAGAGTGAACTATGCTACAGAAAGGTCACGTCCTGGTTTTGGCGGTGGTGGTGGAGGCTATGGTGGTGGCGGCAGTTATGGTGGAGGTGGTTATGGTGGCGGCGGCGGAGGCTATGGCGATGGTGGCTATGGTCGTAATGATAATAACAGTGGTGGACGCTATGGAGGCGGTGGTGATACTTATGCTGCTGGTGGTGAACAAAGCAATGACATCATTGAGACACTTGAAAACAACCATGTGGCAGAGAACAATGATCAACCTGATGACTTCGCTGAGACCCGGAGGTGA 549 0.49 MSTPSVFQAIRSMSSAKLFVGGVSYNTDDMSLREHFARYGEVLEAKIIMDRDTGRSRGFGFITFATAEEASAALQAMDNQDLHGRTIRVNYATERSRPGFGGGGGGYGGGGSYGGGGYGGGGGGYGDGGYGRNDNNSGGRYGGGGDTYAAGGEQSNDIIETLENNHVAENNDQPDDFAETRR 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00289 182 SMART rrm1_1 17 90 IPR000504 GO:0003723
Trre13g00289 182 MobiDBLite consensus disorder prediction 126 152 - -
Trre13g00289 182 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 13 164 - -
Trre13g00289 182 SUPERFAMILY RNA-binding domain, RBD 5 126 IPR035979 GO:0003676
Trre13g00289 182 MobiDBLite consensus disorder prediction 163 182 - -
Trre13g00289 182 CDD RRM2_NsCP33_like 17 92 - -
Trre13g00289 182 Coils Coil 177 182 - -
Trre13g00289 182 Gene3D - 3 114 IPR012677 -
Trre13g00289 182 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Trre13g00289 182 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00289 Trre-Chr13 2274397 2276314 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00289 9 102 C2H2 Transcription Factor Family AT2G19380 35.106 6.19e-13 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00289 K12741 - gmx:100818300 161.384