Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00288 ATGGCGTTCTTTGGTAAAATGGGGAAGTTACTCATGAACTCTGCTGTCAAGCAGATCAATCATGATTTATCGATGTCCACTCCTTCGGTATTTCAAGCAATTAGATCCATGTCATCGGCAAAGCTTTTTGTTGGAGGTGTTTCATATAACACTGATGATATGAGTCTCCGAGAACATTTTGCTCGCTACGGTGAAGTTCTTGAGGCAAAGATTATCATGGATCGTGACACTGGCAGGTCCCGAGGTTTTGGTTTCATAACTTTTGCAACGGCCGAGGAGGCATCTGCTGCCCTTCAGGCTATGGATAACCAGGATCTTCATGGTCGAACGATAAGAGTGAACTATGCTACAGAAAGGTCACGTCCTGGTTTTGGCGGTGGTGGTGGAGGCTATGGTGGTGGCGGCAGTTATGGTGGAGGTGGTTATGGTGGCGGCGGCGGAGGCTATGGCGATGGTGGCTATGGTCGTAATGATAATAACAGTGGTGGACGCTATGGTGGCGGTGGTGGAGGCTATGGCGATGGTGGCTATGGTCGTAATGATAATAACAGTGGTGGACGCTATGGAGGCGGTGGTGATACTTATGCTGCTGGTGGTGAACAAAGCAATGACATCATTGAGACACTTGAAAACAACCATGTGGCAGAGAACAATGATCAACCTGATGACTTCGCTGAGACCCGGAGGTGA 690 0.4855 MAFFGKMGKLLMNSAVKQINHDLSMSTPSVFQAIRSMSSAKLFVGGVSYNTDDMSLREHFARYGEVLEAKIIMDRDTGRSRGFGFITFATAEEASAALQAMDNQDLHGRTIRVNYATERSRPGFGGGGGGYGGGGSYGGGGYGGGGGGYGDGGYGRNDNNSGGRYGGGGGGYGDGGYGRNDNNSGGRYGGGGDTYAAGGEQSNDIIETLENNHVAENNDQPDDFAETRR 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00288 229 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 23 211 - -
Trre13g00288 229 PRINTS Eggshell protein signature 149 159 - -
Trre13g00288 229 PRINTS Eggshell protein signature 123 138 - -
Trre13g00288 229 PRINTS Eggshell protein signature 182 200 - -
Trre13g00288 229 PRINTS Eggshell protein signature 36 52 - -
Trre13g00288 229 SMART rrm1_1 41 114 IPR000504 GO:0003723
Trre13g00288 229 SUPERFAMILY RNA-binding domain, RBD 25 150 IPR035979 GO:0003676
Trre13g00288 229 Gene3D - 31 155 IPR012677 -
Trre13g00288 229 FunFam Glycine-rich RNA-binding protein 3 mitochondrial 21 144 - -
Trre13g00288 229 MobiDBLite consensus disorder prediction 168 229 - -
Trre13g00288 229 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Trre13g00288 229 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Trre13g00288 229 CDD RRM2_NsCP33_like 41 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00288 Trre-Chr13 2274397 2276386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00288 33 126 C2H2 Transcription Factor Family AT2G19380 35.106 2.28e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00288 K12741 - gmx:100807155 190.274